5NXC

LIM Domain Kinase 1 (LIMK1) In Complex With PF-00477736


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.239 
  • R-Value Observed: 0.242 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

LIM Domain Kinase (LIMK1) In Complex With PF-00477736

Mathea, S.Salah, E.Pike, A.C.W.Bushell, S.Carpenter, E.P.von Delft, F.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Bullock, A.N.Knapp, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
LIM domain kinase 1A [auth L]310Homo sapiensMutation(s): 0 
Gene Names: LIMK1LIMK
EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for P53667 (Homo sapiens)
Explore P53667 
Go to UniProtKB:  P53667
PHAROS:  P53667
GTEx:  ENSG00000106683 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP53667
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
9DB
Query on 9DB

Download Ideal Coordinates CCD File 
B [auth L](2~{R})-2-azanyl-2-cyclohexyl-~{N}-[2-(1-methylpyrazol-4-yl)-9-oxidanylidene-3,10,11-triazatricyclo[6.4.1.0^{4,13}]trideca-1,4,6,8(13),11-pentaen-6-yl]ethanamide
C22 H25 N7 O2
NDEXUOWTGYUVGA-LJQANCHMSA-N
Binding Affinity Annotations 
IDSourceBinding Affinity
9DB BindingDB:  5NXC IC50: min: 174, max: 1.00e+4 (nM) from 4 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.239 
  • R-Value Observed: 0.242 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 88.387α = 90
b = 95.836β = 90
c = 84.392γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2017-05-24
    Type: Initial release
  • Version 1.1: 2024-01-17
    Changes: Data collection, Database references, Refinement description