Crystal Structure of Human Jmjd2A in Complex with D-Threo-Isocitrate
Nowak, R., Kopec, J., Johansson, C., Szykowska, A., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A., Oppermann, U.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
LYSINE-SPECIFIC DEMETHYLASE 4A | 381 | Homo sapiens | Mutation(s): 0  EC: 1.14.11 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O75164 (Homo sapiens) Explore O75164  Go to UniProtKB:  O75164 | |||||
PHAROS:  O75164 GTEx:  ENSG00000066135  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O75164 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
N81 Query on N81 | E [auth A], L [auth B] | 3-carboxy-2,3-dideoxy-D-erythro-pentaric acid C6 H8 O7 ODBLHEXUDAPZAU-OKKQSCSOSA-N | |||
DMS Query on DMS | F [auth A], M [auth B] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N | |||
ZN Query on ZN | D [auth A], K [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
EDO Query on EDO | G [auth A] H [auth A] I [auth A] N [auth B] O [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
NI Query on NI | C [auth A], J [auth B] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 100.93 | α = 90 |
b = 148.91 | β = 90 |
c = 57.05 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
SCALA | data scaling |
DIMPLE | phasing |