Crystal structure of a Cytoplasmic protein NCK2 (NCK2) from Homo sapiens at 2.20 A resolution
Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology (TCELL)To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytoplasmic protein NCK2 | 58 | Homo sapiens | Mutation(s): 0  Gene Names: BC007195, GRB4, NCK2 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O43639 (Homo sapiens) Explore O43639  Go to UniProtKB:  O43639 | |||||
PHAROS:  O43639 GTEx:  ENSG00000071051  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O43639 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
IMD Query on IMD | F [auth A], I [auth A] | IMIDAZOLE C3 H5 N2 RAXXELZNTBOGNW-UHFFFAOYSA-O | |||
ZN Query on ZN | C [auth A], D [auth A], E [auth A], G [auth A], K [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
UNL Query on UNL | H [auth A], J [auth B] | Unknown ligand PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Modified Residues 2 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MLY Query on MLY | A, B | L-PEPTIDE LINKING | C8 H18 N2 O2 | LYS | |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 108.398 | α = 90 |
b = 108.398 | β = 90 |
c = 68.199 | γ = 120 |
Software Name | Purpose |
---|---|
MolProbity | model building |
PDB_EXTRACT | data extraction |
SHELX | phasing |
SHARP | phasing |
SCALA | data scaling |
REFMAC | refinement |
MOSFLM | data reduction |
SHELXD | phasing |