Structure of MBD4 bound to O6MeG:T mispair DNA
Ouzon-Shubeita, H., Lin, Y.-L., Lee, S.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Methyl-CpG-binding domain protein 4 | 192 | Homo sapiens | Mutation(s): 1  Gene Names: MBD4, MED1 EC: 3.2.2 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O95243 (Homo sapiens) Explore O95243  Go to UniProtKB:  O95243 | |||||
PHAROS:  O95243 GTEx:  ENSG00000129071  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O95243 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
12-mer DNA(T) | B [auth C] | 12 | N/A | ![]() | |
Sequence AnnotationsExpand | |||||
|
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
12-mer DNA(O6MeG) | C [auth D] | 12 | N/A | ![]() | |
Sequence AnnotationsExpand | |||||
|
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MG Query on MG | D [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 40.983 | α = 90 |
b = 57.64 | β = 90 |
c = 105.1 | γ = 90 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
MOLREP | phasing |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |