Crystal structure of a putative lipoprotein (RUMGNA_00858) from Ruminococcus gnavus ATCC 29149 at 1.76 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Putative Lipoprotein | 252 | Mediterraneibacter gnavus ATCC 29149 | Mutation(s): 0  Gene Names: ZP_02040096.1 | ||
UniProt | |||||
Find proteins for A7AZY4 (Mediterraneibacter gnavus (strain ATCC 29149 / DSM 114966 / JCM 6515 / VPI C7-9)) Explore A7AZY4  Go to UniProtKB:  A7AZY4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A7AZY4 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MET Query on MET | G [auth A], O [auth B] | METHIONINE C5 H11 N O2 S FFEARJCKVFRZRR-BYPYZUCNSA-N | |||
GOL Query on GOL | H [auth A], I [auth A], P [auth B], Q [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CL Query on CL | C [auth A] D [auth A] E [auth A] F [auth A] J [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 40.099 | α = 99.81 |
b = 52.454 | β = 87.5 |
c = 54.908 | γ = 94.96 |
Software Name | Purpose |
---|---|
MolProbity | model building |
PDB_EXTRACT | data extraction |
PHASER | phasing |
XSCALE | data scaling |
BUSTER-TNT | refinement |
XDS | data reduction |
BUSTER | refinement |