4EUY

Crystal structure of thioredoxin-like protein BCE_0499 from Bacillus cereus ATCC 10987

• PDB DOI: https://doi.org/10.2210/pdb4EUY/pdb

• Classification: Structural Genomics, Unknown Function
• Organism(s): Bacillus cereus ATCC 10987
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2012-04-25 Released: 2012-05-16 
• Deposition Author(s): Shabalin, I.G., Kagan, O., Chruszcz, M., Grabowski, M., Savchenko, A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free: 0.296 
• R-Value Work: 0.220 
• R-Value Observed: 0.223 

Literature

Crystal structure of thioredoxin-like protein BCE_0499 from Bacillus cereus

Shabalin, I.G., Kagan, O., Chruszcz, M., Grabowski, M., Savchenko, A., Joachimiak, A., Minor, W.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 12.53 kDa 
• Atom Count: 686 
• Modelled Residue Count: 86 
• Deposited Residue Count: 105 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A	105	Bacillus cereus ATCC 10987	Mutation(s): 0  Gene Names: BCE_0499
UniProt
Find proteins for Q73E61 (Bacillus cereus (strain ATCC 10987 / NRS 248)) Explore Q73E61  Go to UniProtKB:  Q73E61

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free: 0.296 
• R-Value Work: 0.220 
• R-Value Observed: 0.223 
• Space Group: P 4₃ 2₁ 2
• Diffraction Data: https://doi.org/10.18430/M31S39

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.458	α = 90
b = 73.458	β = 90
c = 64.561	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-3000	data collection
HKL-3000	data reduction
HKL-3000	data scaling
HKL-3000	phasing
SHELX	phasing
MLPHARE	phasing
CCP4	phasing
Coot	model building

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-05-16 
Deposition Author(s): Shabalin, I.G., Kagan, O., Chruszcz, M., Grabowski, M., Savchenko, A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2012-05-16
  Type: Initial release
  
• Version 1.1: 2017-11-15
  Changes: Refinement description
• Version 1.2: 2022-04-13
  Changes: Database references, Derived calculations, Structure summary