Structure of a 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase from Burkholderia pseudomallei
Clifton, M.C., Gardberg, A., Seattle Structural Genomics Center for Infectious Disease (SSGCID)To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | 316 | Burkholderia pseudomallei 1710b | Mutation(s): 0  Gene Names: dapD, BURPS1710b_2594 EC: 2.3.1.117 | ||
UniProt | |||||
Find proteins for Q3JR17 (Burkholderia pseudomallei (strain 1710b)) Explore Q3JR17  Go to UniProtKB:  Q3JR17 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q3JR17 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | E [auth A] F [auth A] G [auth A] H [auth A] I [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
EDO Query on EDO | D [auth A] K [auth A] L [auth A] O [auth A] P [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
UNL Query on UNL | AA [auth C], M [auth A], N [auth A], U [auth B] | Unknown ligand LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 70.257 | α = 90 |
b = 117.796 | β = 90 |
c = 123.574 | γ = 90 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
PHASER | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data reduction |
HKL-2000 | data scaling |