Aminoindazole PDK1 Inhibitors: A Case Study in Fragment-Based Drug Discovery
Medina, J.R., Blackledge, C.W., Heerding, D.A., Campobasso, N., Ward, P., Briand, J., Wright, L., Axten, J.M.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
PkB-like | 292 | Homo sapiens | Mutation(s): 0  Gene Names: PkB-like 1 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O15530 (Homo sapiens) Explore O15530  Go to UniProtKB:  O15530 | |||||
PHAROS:  O15530 GTEx:  ENSG00000140992  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O15530 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
JMZ Query on JMZ | L [auth A] | 6-(2-aminopyrimidin-4-yl)-1H-indazol-3-amine C11 H10 N6 QVWIVWPIJUYRRF-UHFFFAOYSA-N | |||
SO4 Query on SO4 | F [auth A] G [auth A] H [auth A] I [auth A] J [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | B [auth A], C [auth A], D [auth A], E [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
SEP Query on SEP | A | L-PEPTIDE LINKING | C3 H8 N O6 P | SER |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 122.761 | α = 90 |
b = 122.761 | β = 90 |
c = 47.106 | γ = 120 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
ADSC | data collection |
PHASER | phasing |