3K7X

Crystal structure of the Lin0763 protein from Listeria innocua. Northeast Structural Genomics Consortium Target LkR23.

• PDB DOI: https://doi.org/10.2210/pdb3K7X/pdb

• Classification: structural genomics, unknown function
• Organism(s): Listeria innocua
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2009-10-13 Released: 2009-10-27 
• Deposition Author(s): Vorobiev, S., Su, M., Seetharaman, J., Maglaqui, M., Ciccosanti, C., Buchwald, W.A., Sahdev, S., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.89 Å
• R-Value Free: 0.184 
• R-Value Work: 0.167 
• R-Value Observed: 0.168 

Literature

Crystal structure of the Lin0763 protein from Listeria innocua.

Vorobiev, S., Su, M., Seetharaman, J., Maglaqui, M., Ciccosanti, C., Buchwald, W.A., Sahdev, S., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: assay for oligomerization

Macromolecule Content

• Total Structure Weight: 41.53 kDa 
• Atom Count: 3,332 
• Modelled Residue Count: 348 
• Deposited Residue Count: 349 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lin0763 protein	A	349	Listeria innocua	Mutation(s): 1  Gene Names: lin0763
UniProt
Find proteins for Q92DQ0 (Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)) Explore Q92DQ0  Go to UniProtKB:  Q92DQ0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PO4	B [auth A]	PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.89 Å
• R-Value Free: 0.184 
• R-Value Work: 0.167 
• R-Value Observed: 0.168 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.194	α = 90
b = 75.333	β = 95.28
c = 53.756	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SnB	phasing
RESOLVE	model building
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
RESOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-10-27 
Deposition Author(s): Vorobiev, S., Su, M., Seetharaman, J., Maglaqui, M., Ciccosanti, C., Buchwald, W.A., Sahdev, S., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Revision History  

• Version 1.0: 2009-10-27
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2017-10-25
  Changes: Author supporting evidence, Refinement description
• Version 1.3: 2021-10-13
  Changes: Database references, Derived calculations
• Version 1.4: 2024-11-06
  Changes: Data collection, Structure summary