3I3S

Crystal Structure of H-Ras with Thr50 replaced by Isoleucine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.36 Å
  • R-Value Free: 0.178 
  • R-Value Work: 0.159 
  • R-Value Observed: 0.160 

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Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

A restricted spectrum of NRAS mutations causes Noonan syndrome.

Cirstea, I.C.Kutsche, K.Dvorsky, R.Gremer, L.Carta, C.Horn, D.Roberts, A.E.Lepri, F.Merbitz-Zahradnik, T.Konig, R.Kratz, C.P.Pantaleoni, F.Dentici, M.L.Joshi, V.A.Kucherlapati, R.S.Mazzanti, L.Mundlos, S.Patton, M.A.Silengo, M.C.Rossi, C.Zampino, G.Digilio, C.Stuppia, L.Seemanova, E.Pennacchio, L.A.Gelb, B.D.Dallapiccola, B.Wittinghofer, A.Ahmadian, M.R.Tartaglia, M.Zenker, M.

(2010) Nat Genet 42: 27-29

  • DOI: https://doi.org/10.1038/ng.497
  • Primary Citation of Related Structures:  
    3I3S

  • PubMed Abstract: 

    Noonan syndrome, a developmental disorder characterized by congenital heart defects, reduced growth, facial dysmorphism and variable cognitive deficits, is caused by constitutional dysregulation of the RAS-MAPK signaling pathway. Here we report that germline NRAS mutations conferring enhanced stimulus-dependent MAPK activation account for some cases of this disorder. These findings provide evidence for an obligate dependency on proper NRAS function in human development and growth.


  • Organizational Affiliation

    Institute of Biochemistry and Molecular Biology II, Heinrich-Heine University Medical Center, Düsseldorf, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
GTPase HRasA [auth R]166Homo sapiensMutation(s): 1 
Gene Names: HRASHRAS1
UniProt & NIH Common Fund Data Resources
Find proteins for P01112 (Homo sapiens)
Explore P01112 
Go to UniProtKB:  P01112
PHAROS:  P01112
GTEx:  ENSG00000174775 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01112
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.36 Å
  • R-Value Free: 0.178 
  • R-Value Work: 0.159 
  • R-Value Observed: 0.160 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 89.21α = 90
b = 89.21β = 90
c = 134.64γ = 120
Software Package:
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345dtbdata collection
XDSdata reduction
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-12-22
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2021-10-13
    Changes: Database references, Derived calculations
  • Version 1.3: 2023-09-06
    Changes: Data collection, Refinement description