Download MendeleyCrystal structure of the C-terminal domain of human MDA5
Li, P., Li, X., Lu, C.To be published.
3GA3
Crystal structure of the C-terminal domain of human MDA5
- PDB DOI: https://doi.org/10.2210/pdb3GA3/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-02-16 Released: 2009-02-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.204
- R-Value Work: 0.180
- R-Value Observed: 0.180
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Interferon-induced helicase C domain-containing protein 1, MDA5 | 133 | Homo sapiens | Mutation(s): 0 Gene Names: IFIH1, IFIH1 or MDA5, MDA5, RH116 EC: 3.6.1 (PDB Primary Data), 3.6.4.13 (UniProt) |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9BYX4 (Homo sapiens) Explore Q9BYX4 Go to UniProtKB: Q9BYX4 | |||||
PHAROS: Q9BYX4 GTEx: ENSG00000115267 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9BYX4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.204
- R-Value Work: 0.180
- R-Value Observed: 0.180
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 28.41 | α = 90 |
| b = 60.92 | β = 102.58 |
| c = 36.443 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CrystalClear | data collection |
| MOLREP | phasing |
| CNS | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-02-24 Deposition Author(s): Li, P.
Revision History (Full details and data files)
- Version 1.0: 2009-02-24
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2024-02-21
Changes: Data collection, Database references, Derived calculations - Version 1.3: 2024-04-03
Changes: Refinement description
