3F0H

Crystal structure of Aminotransferase (RER070207000802) from Eubacterium rectale at 1.70 A resolution

• PDB DOI: https://doi.org/10.2210/pdb3F0H/pdb

• Classification: TRANSFERASE
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-10-24 Released: 2008-11-18 
• Deposition Author(s): Joint Center for Structural Genomics (JCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.167 
• R-Value Work: 0.147 
• R-Value Observed: 0.148 

Literature

Crystal structure of Aminotransferase (RER070207000802) from Eubacterium rectale at 1.70 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 43.25 kDa 
• Atom Count: 3,345 
• Modelled Residue Count: 362 
• Deposited Residue Count: 376 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Aminotransferase	A	376	N/A	Mutation(s): 0  Gene Names: RER070207000802

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	C [auth A], D [auth A], E [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
UNL	B [auth A]	Unknown ligand PEDCQBHIVMGVHV-UHFFFAOYSA-N

Modified Residues  2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
LLP	A	L-PEPTIDE LINKING	C14 H22 N3 O7 P		LYS
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.167 
• R-Value Work: 0.147 
• R-Value Observed: 0.148 
• Space Group: P 6₁ 2 2
• Diffraction Data: https://doi.org/10.18430/M33F0H

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.45	α = 90
b = 62.45	β = 90
c = 373.59	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
PHENIX	refinement
SHELX	phasing
MolProbity	model building
XSCALE	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
SHELXD	phasing
autoSHARP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-11-18 
Deposition Author(s): Joint Center for Structural Genomics (JCSG)

Revision History  

• Version 1.0: 2008-11-18
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Refinement description, Version format compliance
• Version 1.2: 2017-10-25
  Changes: Refinement description
• Version 1.3: 2019-07-24
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.4: 2023-12-27
  Changes: Data collection, Database references, Derived calculations