Download MendeleyImplication of Arg bindings on aromatic surfaces of lysozyme for additives that prevent protein aggregation
Ito, L., Shiraki, K., Matsuura, T., Yamaguchi, H.To be published.
3A34
Effect of Ariginine on lysozyme
- PDB DOI: https://doi.org/10.2210/pdb3A34/pdb
- Classification: HYDROLASE
- Organism(s): Gallus gallus
- Mutation(s): No
- Deposited: 2009-06-09 Released: 2010-06-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.226
- R-Value Work: 0.196
- R-Value Observed: 0.197
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lysozyme C | 129 | Gallus gallus | Mutation(s): 0 EC: 3.2.1.17 |  | |
UniProt | |||||
Find proteins for P00698 (Gallus gallus) Explore P00698 Go to UniProtKB: P00698 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00698 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ARG Query on ARG | B [auth A], C [auth A], D [auth A], E [auth A] | ARGININE C6 H15 N4 O2 ODKSFYDXXFIFQN-BYPYZUCNSA-O |  | ||
| ACT Query on ACT | J [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| CL Query on CL | F [auth A], G [auth A], H [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| NA Query on NA | I [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.226
- R-Value Work: 0.196
- R-Value Observed: 0.197
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 78.357 | α = 90 |
| b = 78.357 | β = 90 |
| c = 37.312 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
Entry History
Deposition Data
- Released Date: 2010-06-16 Deposition Author(s): Ito, L., Shiraki, K., Matsuura, T., Yamaguchi, H.
Revision History (Full details and data files)
- Version 1.0: 2010-06-16
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
