2YVB

High resolution X-ray crystal structure of Tetragonal Hen egg white lysozyme

• PDB DOI: https://doi.org/10.2210/pdb2YVB/pdb

• Classification: HYDROLASE
• Organism(s): Gallus gallus
• Mutation(s): No 


• Deposited: 2007-04-10 Released: 2007-04-24 
• Deposition Author(s): Naresh, M.D., Jaimohan, S.M., Kumar, V.V., Mandal, A.B.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.62 Å
• R-Value Free: 0.277 
• R-Value Work: 0.229 
• R-Value Observed: 0.231 

Literature

High resolution X-ray crystal structure of Tetragonal Hen egg white lysozyme

Naresh, M.D., Jaimohan, S.M., Kumar, V.V.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 14.33 kDa 
• Atom Count: 1,082 
• Modelled Residue Count: 129 
• Deposited Residue Count: 129 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lysozyme C	A	129	Gallus gallus	Mutation(s): 0  EC: 3.2.1.17
UniProt
Find proteins for P00698 (Gallus gallus) Explore P00698  Go to UniProtKB:  P00698

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.62 Å
• R-Value Free: 0.277 
• R-Value Work: 0.229 
• R-Value Observed: 0.231 
• Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.341	α = 90
b = 79.341	β = 90
c = 37.867	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MAR345	data collection
AUTOMAR	data reduction
AMoRE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-04-24 
Deposition Author(s): Naresh, M.D., Jaimohan, S.M., Kumar, V.V., Mandal, A.B.

Revision History  

• Version 1.0: 2007-04-24
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2013-09-04
  Changes: Structure summary
• Version 1.4: 2017-10-11
  Changes: Refinement description
• Version 1.5: 2023-10-25
  Changes: Data collection, Database references, Refinement description