2UYL

Crystal structure of a monoclonal antibody directed against an antigenic determinant common to Ogawa and Inaba serotypes of Vibrio cholerae O1

PDB DOI: https://doi.org/10.2210/pdb2UYL/pdb

Classification: IMMUNE SYSTEM
Organism(s): Mus musculus
Mutation(s): No

Deposited: 2007-04-10 Released: 2008-05-13
Deposition Author(s): Ahmed, F., Haouz, A., Nato, F., Fournier, J.M., Alzari, P.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.257
R-Value Work: 0.211
R-Value Observed: 0.213

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of a Monoclonal Antibody Directed Against an Antigenic Determinant Common to Ogawa and Inaba Serotypes of Vibrio Cholerae O1.

Ahmed, F., Andre-Leroux, G., Haouz, A., Boutonnier, A., Delepierre, M., Qadri, F., Nato, F., Fournier, J.M., Alzari, P.M.

(2008) Proteins 70: 284

PubMed: 17876834 Search on PubMed
DOI: https://doi.org/10.1002/prot.21609
Primary Citation of Related Structures:
2UYL

Organizational Affiliation

Institut Pasteur and CNRS URA 2185, 25/28 rue du Dr. Roux, Paris, France.

Macromolecule Content

Total Structure Weight: 190.66 kDa
Atom Count: 13,057
Modelled Residue Count: 1,718
Deposited Residue Count: 1,760
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MONOCLONAL ANTIBODY F-22-30	A, C [auth M], E [auth V], G [auth X]	219	Mus musculus	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
MONOCLONAL ANTIBODY F-22-30	B, D [auth N], F [auth W], H [auth Y]	221	Mus musculus	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.257
R-Value Work: 0.211
R-Value Observed: 0.213
Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.06	α = 111.05
b = 75.225	β = 90.39
c = 98.409	γ = 106.83

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
AMoRE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2008-05-13

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-05-13
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.2: 2012-06-06
Changes: Other

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.