Crystal structure of putative tRNA-(ms(2)io(6)a)-hydroxylase (NP_744337.1) from Pseudomonas Putida KT2440 at 2.05 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
TRNA-(Ms(2)io(6)a)-hydroxylase, putative | 206 | Pseudomonas putida KT2440 | Mutation(s): 5  Gene Names: NP_744337.1 | ||
UniProt | |||||
Find proteins for Q88KV1 (Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)) Explore Q88KV1  Go to UniProtKB:  Q88KV1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q88KV1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EDO Query on EDO | F [auth A] G [auth A] H [auth A] I [auth A] J [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
FE Query on FE | C [auth A], D [auth A], M [auth B], N [auth B] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N | |||
PER Query on PER | E [auth A] | PEROXIDE ION O2 ANAIPYUSIMHBEL-UHFFFAOYSA-N | |||
UNL Query on UNL | O [auth B] | Unknown ligand ANAIPYUSIMHBEL-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 61.274 | α = 90 |
b = 70.215 | β = 90 |
c = 84.285 | γ = 90 |
Software Name | Purpose |
---|---|
MolProbity | model building |
SHELX | phasing |
REFMAC | refinement |
SCALA | data scaling |
PDB_EXTRACT | data extraction |
MOSFLM | data reduction |
CCP4 | data scaling |
SHELXD | phasing |
SHARP | phasing |