Download MendeleyCrystal structure of Acyl-CoA hydrolase (15159470) from AGROBACTERIUM TUMEFACIENS at 2.65 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2GVH
Crystal structure of Acyl-CoA hydrolase (15159470) from AGROBACTERIUM TUMEFACIENS at 2.65 A resolution
- PDB DOI: https://doi.org/10.2210/pdb2GVH/pdb
- Classification: HYDROLASE
- Organism(s): Agrobacterium fabrum str. C58
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2006-05-02 Released: 2006-05-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.244
- R-Value Work: 0.226
- R-Value Observed: 0.227
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| AGR_L_2016p | 288 | Agrobacterium fabrum str. C58 | Mutation(s): 9 Gene Names: 15159470 EC: 3.1.2.20 |  | |
UniProt | |||||
Find proteins for Q7CTE6 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore Q7CTE6 Go to UniProtKB: Q7CTE6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7CTE6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NA Query on NA | D [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.244
- R-Value Work: 0.226
- R-Value Observed: 0.227
- Space Group: P 43
- Diffraction Data: https://doi.org/10.18430/M32GVH
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 121.209 | α = 90 |
| b = 121.209 | β = 90 |
| c = 81.844 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
| DENZO | data reduction |
| SHELXD | phasing |
| SHARP | phasing |
Entry History
Deposition Data
- Released Date: 2006-05-30 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-05-30
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.3: 2023-01-25
Changes: Database references, Derived calculations - Version 1.4: 2024-10-30
Changes: Data collection, Refinement description, Structure summary
