Extensive Cross-Linking of the Shiga-Like Toxin 1 B Subunit by a Bivalent Ligand
Dodd, R.B., Read, R.J.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
SHIGA-LIKE TOXIN 1 B SUBUNIT | 69 | Phage h30 | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P69178 (Bacteriophage H30) Explore P69178  Go to UniProtKB:  P69178 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P69178 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose | CA [auth c], DA [auth d], K, L, M, CA [auth c], DA [auth d], K, L, M, N, O, Q, V, Y | 3 | N/A | ||
Glycosylation Resources | |||||
GlyTouCan:  G79094AA GlyCosmos:  G79094AA GlyGen:  G79094AA |
Entity ID: 3 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-galactopyranose-(1-4)-alpha-D-galactopyranose | P, R, U, W, X P, R, U, W, X, Z | 2 | N/A | ||
Glycosylation Resources | |||||
GlyTouCan:  G54046EC GlyCosmos:  G54046EC GlyGen:  G54046EC |
Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
S10 Query on S10 | EA [auth A] GA [auth C] HA [auth D] IA [auth E] JA [auth F] | DIETHYL PROPANE-1,3-DIYLBISCARBAMATE C9 H18 N2 O4 BWWHOVJFNMPUKF-UHFFFAOYSA-N | |||
GLA Query on GLA | FA [auth C] | alpha-D-galactopyranose C6 H12 O6 WQZGKKKJIJFFOK-PHYPRBDBSA-N | |||
SO4 Query on SO4 | LA [auth I] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 114.313 | α = 90 |
b = 114.313 | β = 90 |
c = 406.936 | γ = 120 |
Software Name | Purpose |
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REFMAC | refinement |
MOSFLM | data reduction |
SCALA | data scaling |
AMoRE | phasing |