2B5I
cytokine receptor complex
- PDB DOI: https://doi.org/10.2210/pdb2B5I/pdb
- Classification: CYTOKINE/CYTOKINE RECEPTOR
- Organism(s): Homo sapiens
- Expression System: Trichoplusia ni
- Mutation(s): Yes 
- Deposited: 2005-09-28 Released: 2005-11-29 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.269 
- R-Value Work: 0.223 
- R-Value Observed: 0.225 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Interleukin-2 | 133 | Homo sapiens | Mutation(s): 0  Gene Names: IL2 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P60568 (Homo sapiens) Explore P60568  Go to UniProtKB:  P60568 | |||||
PHAROS:  P60568 GTEx:  ENSG00000109471  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60568 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Interleukin-2 receptor beta chain | 214 | Homo sapiens | Mutation(s): 3  Gene Names: IL2RB | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P14784 (Homo sapiens) Explore P14784  Go to UniProtKB:  P14784 | |||||
PHAROS:  P14784 GTEx:  ENSG00000100385  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P14784 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytokine receptor common gamma chain | 199 | Homo sapiens | Mutation(s): 1  Gene Names: IL2RG | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P31785 (Homo sapiens) Explore P31785  Go to UniProtKB:  P31785 | |||||
PHAROS:  P31785 GTEx:  ENSG00000147168  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P31785 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Interleukin-2 receptor alpha chain | 217 | Homo sapiens | Mutation(s): 1  Gene Names: IL2RA | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01589 (Homo sapiens) Explore P01589  Go to UniProtKB:  P01589 | |||||
PHAROS:  P01589 GTEx:  ENSG00000134460  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01589 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | G [auth C], H [auth C] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.269 
- R-Value Work: 0.223 
- R-Value Observed: 0.225 
- Space Group: C 1 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 113.913 | α = 90 |
b = 87.709 | β = 116.32 |
c = 130.177 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
MOSFLM | data reduction |
CCP4 | data scaling |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2005-11-29  Deposition Author(s): Wang, X., Rickert, M., Garcia, K.C.
Revision History (Full details and data files)
- Version 1.0: 2005-11-29
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2021-10-20
Changes: Database references, Structure summary