1VVJ

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.44 Å
  • R-Value Free: 0.285 
  • R-Value Work: 0.243 
  • R-Value Observed: 0.245 

Starting Models: experimental
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This is version 1.4 of the entry. See complete history


Literature

Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.

Maehigashi, T.Dunkle, J.A.Miles, S.J.Dunham, C.M.

(2014) Proc Natl Acad Sci U S A 111: 12740-12745

  • DOI: https://doi.org/10.1073/pnas.1409436111
  • Primary Citation of Related Structures:  
    1VVJ, 4L47, 4L71, 4LEL, 4LFZ, 4LNT, 4LSK, 4LT8, 4P70

  • PubMed Abstract: 

    Maintenance of the correct reading frame on the ribosome is essential for accurate protein synthesis. Here, we report structures of the 70S ribosome bound to frameshift suppressor tRNA(SufA6) and N1-methylguanosine at position 37 (m(1)G37) modification-deficient anticodon stem loop(Pro), both of which cause the ribosome to decode 4 rather than 3 nucleotides, resulting in a +1 reading frame. Our results reveal that decoding at +1 suppressible codons causes suppressor tRNA(SufA6) to undergo a rearrangement of its 5' stem that destabilizes U32, thereby disrupting the conserved U32-A38 base pair. Unexpectedly, the removal of the m(1)G37 modification of tRNA(Pro) also disrupts U32-A38 pairing in a structurally analogous manner. The lack of U32-A38 pairing provides a structural correlation between the transition from canonical translation and a +1 reading of the mRNA. Our structures clarify the molecular mechanism behind suppressor tRNA-induced +1 frameshifting and advance our understanding of the role played by the ribosome in maintaining the correct translational reading frame.


  • Organizational Affiliation

    Department of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322.


Macromolecules

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S2B [auth QB],
DB [auth XB]
256Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S3C [auth QC],
EB [auth XC]
239Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S4D [auth QD],
FB [auth XD]
209Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S5E [auth QE],
GB [auth XE]
162Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S6F [auth QF],
HB [auth XF]
101Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S7G [auth QG],
IB [auth XG]
156Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S8H [auth QH],
JB [auth XH]
138Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S9I [auth QI],
KB [auth XI]
128Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S10J [auth QJ],
LB [auth XJ]
105Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S11K [auth QK],
MB [auth XK]
129Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S12L [auth QL],
NB [auth XL]
132Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S13M [auth QM],
OB [auth XM]
126Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S14N [auth QN],
PB [auth XN]
61Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S15O [auth QO],
QB [auth XO]
89Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S16P [auth QP],
RB [auth XP]
88Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S17Q [auth QQ],
SB [auth XQ]
105Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S18R [auth QR],
TB [auth XR]
88Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S19S [auth QS],
UB [auth XS]
93Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S20T [auth QT],
VB [auth XT]
106Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S21U [auth QU],
WB [auth XU]
27Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L2AA [auth RD],
CC [auth YD]
276Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L3BA [auth RE],
DC [auth YE]
206Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L4CA [auth RF],
EC [auth YF]
210Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHN9 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L5DA [auth RG],
FC [auth YG]
182Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L6EA [auth RH],
GC [auth YH]
180Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L9FA [auth RI],
HC [auth YI]
148Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L13GA [auth RN],
IC [auth YN]
140Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L14HA [auth RO],
JC [auth YO]
122Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L15IA [auth RP],
KC [auth YP]
150Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L16JA [auth RQ],
LC [auth YQ]
141Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L17KA [auth RR],
MC [auth YR]
118Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L18LA [auth RS],
NC [auth YS]
112Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L19MA [auth RT],
OC [auth YT]
146Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L20NA [auth RU],
PC [auth YU]
118Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L21OA [auth RV],
QC [auth YV]
101Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L22PA [auth RW],
RC [auth YW]
113Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L23QA [auth RX],
SC [auth YX]
96Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L24RA [auth RY],
TC [auth YY]
110Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L25SA [auth RZ],
UC [auth YZ]
206Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L27TA [auth R0],
VC [auth Y0]
85Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L28UA [auth R1],
WC [auth Y1]
98Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L29VA [auth R2],
XC [auth Y2]
72Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHP6 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L30WA [auth R3],
YC [auth Y3]
60Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHQ6 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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UniProt GroupQ5SHQ6
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L32XA [auth R4],
ZC [auth Y4]
71Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SJE1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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UniProt GroupQ5SJE1
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L33AD [auth Y5],
YA [auth R5]
60Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for P80339 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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UniProt GroupP80339
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L34BD [auth Y6],
ZA [auth R6]
54Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for P35871 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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UniProt GroupP35871
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L35AB [auth R7],
CD [auth Y7]
49Thermus thermophilus HB8Mutation(s): 0 
UniProt
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UniProt GroupP80340
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
tRNA acceptor end mimicBB [auth R8],
DD [auth Y8]
65Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SKU1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 1
MoleculeChains LengthOrganismImage
16S rRNAA [auth QA],
CB [auth XA]
1,522Thermus thermophilus HB8
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Entity ID: 22
MoleculeChains LengthOrganismImage
P-site tRNA fMetV [auth QV],
XB [auth XV]
77Escherichia coli str. K-12 substr. MDS42
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Entity ID: 23
MoleculeChains LengthOrganismImage
A-site ASL SufA6W [auth QX],
YB [auth XX]
25synthetic construct
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Entity ID: 24
MoleculeChains LengthOrganismImage
messenger RNAX [auth QY],
ZB [auth XY]
18synthetic construct
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Entity ID: 25
MoleculeChains LengthOrganismImage
23S rRNAAC [auth YA],
Y [auth RA]
2,916Thermus thermophilus HB8
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Entity ID: 26
MoleculeChains LengthOrganismImage
5S rRNABC [auth YB],
Z [auth RB]
122Thermus thermophilus HB8
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Entity ID: 55
MoleculeChains LengthOrganismImage
RNA (5'-R(*CP*CP*(PPU))-3')ED [auth Z6],
FD [auth Z8]
3synthetic construct
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PAR
Query on PAR

Download Ideal Coordinates CCD File 
OF [auth QA],
UQ [auth XA]
PAROMOMYCIN
C23 H45 N5 O14
UOZODPSAJZTQNH-LSWIJEOBSA-N
ZN
Query on ZN

Download Ideal Coordinates CCD File 
PF [auth QD],
TF [auth QN],
VQ [auth XD],
YQ [auth XN]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
AAA [auth YA]
AE [auth QA]
AF [auth QA]
AG [auth RA]
AH [auth RA]
AAA [auth YA],
AE [auth QA],
AF [auth QA],
AG [auth RA],
AH [auth RA],
AI [auth RA],
AJ [auth RA],
AK [auth RA],
AL [auth RA],
AM [auth RA],
AN [auth RA],
AO [auth RA],
AP [auth XA],
AQ [auth XA],
AR [auth XV],
AS [auth YA],
AT [auth YA],
AU [auth YA],
AV [auth YA],
AW [auth YA],
AX [auth YA],
AY [auth YA],
AZ [auth YA],
BAA [auth YA],
BE [auth QA],
BF [auth QA],
BG [auth RA],
BH [auth RA],
BI [auth RA],
BJ [auth RA],
BK [auth RA],
BL [auth RA],
BM [auth RA],
BN [auth RA],
BO [auth RA],
BP [auth XA],
BQ [auth XA],
BR [auth YA],
BS [auth YA],
BT [auth YA],
BU [auth YA],
BV [auth YA],
BW [auth YA],
BX [auth YA],
BY [auth YA],
BZ [auth YA],
CAA [auth YA],
CE [auth QA],
CF [auth QA],
CG [auth RA],
CH [auth RA],
CI [auth RA],
CJ [auth RA],
CK [auth RA],
CL [auth RA],
CM [auth RA],
CN [auth RA],
CO [auth RB],
CP [auth XA],
CQ [auth XA],
CR [auth YA],
CS [auth YA],
CT [auth YA],
CU [auth YA],
CV [auth YA],
CW [auth YA],
CX [auth YA],
CY [auth YA],
CZ [auth YA],
DAA [auth YA],
DE [auth QA],
DF [auth QA],
DG [auth RA],
DH [auth RA],
DI [auth RA],
DJ [auth RA],
DK [auth RA],
DL [auth RA],
DM [auth RA],
DN [auth RA],
DO [auth RB],
DP [auth XA],
DQ [auth XA],
DR [auth YA],
DS [auth YA],
DT [auth YA],
DU [auth YA],
DV [auth YA],
DW [auth YA],
DX [auth YA],
DY [auth YA],
DZ [auth YA],
EAA [auth YA],
EE [auth QA],
EF [auth QA],
EG [auth RA],
EH [auth RA],
EI [auth RA],
EJ [auth RA],
EK [auth RA],
EL [auth RA],
EM [auth RA],
EN [auth RA],
EO [auth RE],
EP [auth XA],
EQ [auth XA],
ER [auth YA],
ES [auth YA],
ET [auth YA],
EU [auth YA],
EV [auth YA],
EW [auth YA],
EX [auth YA],
EY [auth YA],
EZ [auth YA],
FAA [auth YA],
FE [auth QA],
FF [auth QA],
FG [auth RA],
FH [auth RA],
FI [auth RA],
FJ [auth RA],
FK [auth RA],
FL [auth RA],
FM [auth RA],
FN [auth RA],
FO [auth RE],
FP [auth XA],
FQ [auth XA],
FR [auth YA],
FS [auth YA],
FT [auth YA],
FU [auth YA],
FV [auth YA],
FW [auth YA],
FX [auth YA],
FY [auth YA],
FZ [auth YA],
GAA [auth YA],
GD [auth QA],
GE [auth QA],
GF [auth QA],
GG [auth RA],
GH [auth RA],
GI [auth RA],
GJ [auth RA],
GK [auth RA],
GL [auth RA],
GM [auth RA],
GN [auth RA],
GO [auth RF],
GP [auth XA],
GQ [auth XA],
GR [auth YA],
GS [auth YA],
GT [auth YA],
GU [auth YA],
GV [auth YA],
GW [auth YA],
GX [auth YA],
GY [auth YA],
GZ [auth YA],
HAA [auth YA],
HD [auth QA],
HE [auth QA],
HF [auth QA],
HG [auth RA],
HH [auth RA],
HI [auth RA],
HJ [auth RA],
HK [auth RA],
HL [auth RA],
HM [auth RA],
HN [auth RA],
HO [auth RP],
HP [auth XA],
HQ [auth XA],
HR [auth YA],
HS [auth YA],
HT [auth YA],
HU [auth YA],
HV [auth YA],
HW [auth YA],
HX [auth YA],
HY [auth YA],
HZ [auth YA],
IAA [auth YA],
ID [auth QA],
IE [auth QA],
IF [auth QA],
IG [auth RA],
IH [auth RA],
II [auth RA],
IJ [auth RA],
IK [auth RA],
IL [auth RA],
IM [auth RA],
IN [auth RA],
IO [auth R5],
IP [auth XA],
IQ [auth XA],
IR [auth YA],
IS [auth YA],
IT [auth YA],
IU [auth YA],
IV [auth YA],
IW [auth YA],
IX [auth YA],
IY [auth YA],
IZ [auth YA],
JAA [auth YB],
JD [auth QA],
JE [auth QA],
JF [auth QA],
JG [auth RA],
JH [auth RA],
JI [auth RA],
JJ [auth RA],
JK [auth RA],
JL [auth RA],
JM [auth RA],
JN [auth RA],
JO [auth XA],
JP [auth XA],
JQ [auth XA],
JR [auth YA],
JS [auth YA],
JT [auth YA],
JU [auth YA],
JV [auth YA],
JW [auth YA],
JX [auth YA],
JY [auth YA],
JZ [auth YA],
KAA [auth YB],
KD [auth QA],
KE [auth QA],
KF [auth QA],
KG [auth RA],
KH [auth RA],
KI [auth RA],
KJ [auth RA],
KK [auth RA],
KL [auth RA],
KM [auth RA],
KN [auth RA],
KO [auth XA],
KP [auth XA],
KQ [auth XA],
KR [auth YA],
KS [auth YA],
KT [auth YA],
KU [auth YA],
KV [auth YA],
KW [auth YA],
KX [auth YA],
KY [auth YA],
KZ [auth YA],
LAA [auth YE],
LD [auth QA],
LE [auth QA],
LF [auth QA],
LG [auth RA],
LH [auth RA],
LI [auth RA],
LJ [auth RA],
LK [auth RA],
LL [auth RA],
LM [auth RA],
LN [auth RA],
LO [auth XA],
LP [auth XA],
LQ [auth XA],
LR [auth YA],
LS [auth YA],
LT [auth YA],
LU [auth YA],
LV [auth YA],
LW [auth YA],
LX [auth YA],
LY [auth YA],
LZ [auth YA],
MAA [auth YE],
MD [auth QA],
ME [auth QA],
MF [auth QA],
MG [auth RA],
MH [auth RA],
MI [auth RA],
MJ [auth RA],
MK [auth RA],
ML [auth RA],
MM [auth RA],
MN [auth RA],
MO [auth XA],
MP [auth XA],
MQ [auth XA],
MR [auth YA],
MS [auth YA],
MT [auth YA],
MU [auth YA],
MV [auth YA],
MW [auth YA],
MX [auth YA],
MY [auth YA],
MZ [auth YA],
NAA [auth YX],
ND [auth QA],
NE [auth QA],
NF [auth QA],
NG [auth RA],
NH [auth RA],
NI [auth RA],
NJ [auth RA],
NK [auth RA],
NL [auth RA],
NM [auth RA],
NN [auth RA],
NO [auth XA],
NP [auth XA],
NQ [auth XA],
NR [auth YA],
NS [auth YA],
NT [auth YA],
NU [auth YA],
NV [auth YA],
NW [auth YA],
NX [auth YA],
NY [auth YA],
NZ [auth YA],
OAA [auth Y5],
OD [auth QA],
OE [auth QA],
OG [auth RA],
OH [auth RA],
OI [auth RA],
OJ [auth RA],
OK [auth RA],
OL [auth RA],
OM [auth RA],
ON [auth RA],
OO [auth XA],
OP [auth XA],
OQ [auth XA],
OR [auth YA],
OS [auth YA],
OT [auth YA],
OU [auth YA],
OV [auth YA],
OW [auth YA],
OX [auth YA],
OY [auth YA],
OZ [auth YA],
PD [auth QA],
PE [auth QA],
PG [auth RA],
PH [auth RA],
PI [auth RA],
PJ [auth RA],
PK [auth RA],
PL [auth RA],
PM [auth RA],
PN [auth RA],
PO [auth XA],
PP [auth XA],
PQ [auth XA],
PR [auth YA],
PS [auth YA],
PT [auth YA],
PU [auth YA],
PV [auth YA],
PW [auth YA],
PX [auth YA],
PY [auth YA],
PZ [auth YA],
QD [auth QA],
QE [auth QA],
QF,
QG [auth RA],
QH [auth RA],
QI [auth RA],
QJ [auth RA],
QK [auth RA],
QL [auth RA],
QM [auth RA],
QN [auth RA],
QO [auth XA],
QP [auth XA],
QQ [auth XA],
QR [auth YA],
QS [auth YA],
QT [auth YA],
QU [auth YA],
QV [auth YA],
QW [auth YA],
QX [auth YA],
QY [auth YA],
QZ [auth YA],
RD [auth QA],
RE [auth QA],
RF [auth QH],
RG [auth RA],
RH [auth RA],
RI [auth RA],
RJ [auth RA],
RK [auth RA],
RL [auth RA],
RM [auth RA],
RN [auth RA],
RO [auth XA],
RP [auth XA],
RQ [auth XA],
RR [auth YA],
RS [auth YA],
RT [auth YA],
RU [auth YA],
RV [auth YA],
RW [auth YA],
RX [auth YA],
RY [auth YA],
RZ [auth YA],
SD [auth QA],
SE [auth QA],
SF [auth QM],
SG [auth RA],
SH [auth RA],
SI [auth RA],
SJ [auth RA],
SK [auth RA],
SL [auth RA],
SM [auth RA],
SN [auth RA],
SO [auth XA],
SP [auth XA],
SQ [auth XA],
SR [auth YA],
SS [auth YA],
ST [auth YA],
SU [auth YA],
SV [auth YA],
SW [auth YA],
SX [auth YA],
SY [auth YA],
SZ [auth YA],
TD [auth QA],
TE [auth QA],
TG [auth RA],
TH [auth RA],
TI [auth RA],
TJ [auth RA],
TK [auth RA],
TL [auth RA],
TM [auth RA],
TN [auth RA],
TO [auth XA],
TP [auth XA],
TQ [auth XA],
TR [auth YA],
TS [auth YA],
TT [auth YA],
TU [auth YA],
TV [auth YA],
TW [auth YA],
TX [auth YA],
TY [auth YA],
TZ [auth YA],
UD [auth QA],
UE [auth QA],
UF [auth QV],
UG [auth RA],
UH [auth RA],
UI [auth RA],
UJ [auth RA],
UK [auth RA],
UL [auth RA],
UM [auth RA],
UN [auth RA],
UO [auth XA],
UP [auth XA],
UR [auth YA],
US [auth YA],
UT [auth YA],
UU [auth YA],
UV [auth YA],
UW [auth YA],
UX [auth YA],
UY [auth YA],
UZ [auth YA],
VD [auth QA],
VE [auth QA],
VF [auth QV],
VG [auth RA],
VH [auth RA],
VI [auth RA],
VJ [auth RA],
VK [auth RA],
VL [auth RA],
VM [auth RA],
VN [auth RA],
VO [auth XA],
VP [auth XA],
VR [auth YA],
VS [auth YA],
VT [auth YA],
VU [auth YA],
VV [auth YA],
VW [auth YA],
VX [auth YA],
VY [auth YA],
VZ [auth YA],
WD [auth QA],
WE [auth QA],
WF [auth QX],
WG [auth RA],
WH [auth RA],
WI [auth RA],
WJ [auth RA],
WK [auth RA],
WL [auth RA],
WM [auth RA],
WN [auth RA],
WO [auth XA],
WP [auth XA],
WQ [auth XM],
WR [auth YA],
WS [auth YA],
WT [auth YA],
WU [auth YA],
WV [auth YA],
WW [auth YA],
WX [auth YA],
WY [auth YA],
WZ [auth YA],
XD [auth QA],
XE [auth QA],
XF [auth QX],
XG [auth RA],
XH [auth RA],
XI [auth RA],
XJ [auth RA],
XK [auth RA],
XL [auth RA],
XM [auth RA],
XN [auth RA],
XO [auth XA],
XP [auth XA],
XQ [auth XM],
XR [auth YA],
XS [auth YA],
XT [auth YA],
XU [auth YA],
XV [auth YA],
XW [auth YA],
XX [auth YA],
XY [auth YA],
XZ [auth YA],
YD [auth QA],
YE [auth QA],
YF [auth RA],
YG [auth RA],
YH [auth RA],
YI [auth RA],
YJ [auth RA],
YK [auth RA],
YL [auth RA],
YM [auth RA],
YN [auth RA],
YO [auth XA],
YP [auth XA],
YR [auth YA],
YS [auth YA],
YT [auth YA],
YU [auth YA],
YV [auth YA],
YW [auth YA],
YX [auth YA],
YY [auth YA],
YZ [auth YA],
ZD [auth QA],
ZE [auth QA],
ZF [auth RA],
ZG [auth RA],
ZH [auth RA],
ZI [auth RA],
ZJ [auth RA],
ZK [auth RA],
ZL [auth RA],
ZM [auth RA],
ZN [auth RA],
ZO [auth XA],
ZP [auth XA],
ZQ [auth XV],
ZR [auth YA],
ZS [auth YA],
ZT [auth YA],
ZU [auth YA],
ZV [auth YA],
ZW [auth YA],
ZX [auth YA],
ZY [auth YA],
ZZ [auth YA]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.44 Å
  • R-Value Free: 0.285 
  • R-Value Work: 0.243 
  • R-Value Observed: 0.245 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 209.5456α = 90
b = 449.211β = 90
c = 619.2374γ = 90
Software Package:
Software NamePurpose
XSCALEdata scaling
PHENIXrefinement
XDSdata scaling
XDSdata reduction
PHENIXphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-08-06
    Type: Initial release
  • Version 1.1: 2014-09-03
    Changes: Database references
  • Version 1.2: 2014-09-24
    Changes: Database references
  • Version 1.3: 2014-12-10
    Changes: Other
  • Version 1.4: 2023-08-23
    Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary