1BKL

SELF-ASSOCIATED APO SRC SH2 DOMAIN

PDB DOI: https://doi.org/10.2210/pdb1BKL/pdb

Classification: V-SRC SH2 DOMAIN
Organism(s): Rous sarcoma virus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 1997-05-02 Released: 1997-07-23
Deposition Author(s): Holland, D.R., Rubin, J.R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.304
R-Value Work: 0.200
R-Value Observed: 0.200

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Novel Pp60Src Sh2 Domain Crystal Structures: A 2.0 Angstrom Co-Crystal Structure of a D-Amino Acid Substituted Phosphopeptide Complex and a 2.1 Angstrom Apo Structure Displaying Self-Association

Holland, D.R., Lunney, E.A., Plummer, M.S., Mueller, W.T., Mcconnell, P., Pavlovsky, A., Para, K.S., Shahripour, A., Humblet, C., Sawyer, T.K., Rubin, J.R.

To be published.

Macromolecule Content

Total Structure Weight: 12.84 kDa
Atom Count: 919
Modelled Residue Count: 110
Deposited Residue Count: 113
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PP60 V-SRC TYROSINE KINASE TRANSFORMING PROTEIN	A	113	Rous sarcoma virus	Mutation(s): 0 EC: 2.7.1.112 (PDB Primary Data), 2.7.10.2 (UniProt)
UniProt
Find proteins for P00524 (Rous sarcoma virus subgroup A (strain Schmidt-Ruppin)) Explore P00524 Go to UniProtKB: P00524
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P00524
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.304
R-Value Work: 0.200
R-Value Observed: 0.200
Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.2	α = 90
b = 71.9	β = 90
c = 34.6	γ = 90

Software Package:

Software Name	Purpose
X-PLOR	model building
X-PLOR	refinement
XDS	data reduction
XDS	data scaling
X-PLOR	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 1997-07-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 1997-07-23
Type: Initial release
Version 1.1: 2008-03-24
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-08-02
Changes: Database references, Other, Refinement description
Version 1.4: 2024-05-22
Changes: Data collection

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.