1NDU

Bacillus lentus subtilisin variant S101G/V104N

PDB DOI: https://doi.org/10.2210/pdb1NDU/pdb

Classification: HYDROLASE
Organism(s): Lederbergia lenta
Mutation(s): Yes

Deposited: 2002-12-09 Released: 2004-04-06
Deposition Author(s): Pan, X., Bott, R., Glatz, C.E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.222
R-Value Work: 0.173
R-Value Observed: 0.173

wwPDB Validation 3D Report Full Report

This is version 1.6 of the entry. See complete history.

Literature

Subtilisin surface properties and crystal growth kinetics

Pan, X., Bott, R., Glatz, C.E.

(2003) J Cryst Growth 254: 492-502

DOI: https://doi.org/10.1016/S0022-0248(03)01178-3

Macromolecule Content

Total Structure Weight: 26.81 kDa
Atom Count: 1,962
Modelled Residue Count: 269
Deposited Residue Count: 269
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Subtilisin Savinase	A	269	Lederbergia lenta	Mutation(s): 2 EC: 3.4.21.62
UniProt
Find proteins for P29600 (Lederbergia lenta) Explore P29600 Go to UniProtKB: P29600
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P29600
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A] mmCIF format, chain B [auth A] mmCIF format, chain C [auth A]	B [auth A], C [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.222
R-Value Work: 0.173
R-Value Observed: 0.173
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.75	α = 90
b = 62.5	β = 90
c = 75.6	γ = 90

Software Package:

Software Name	Purpose
CNX	refinement
SHELXL-97	refinement
CNX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2004-04-06

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2004-04-06
Type: Initial release
Version 1.1: 2008-04-28
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-11
Changes: Refinement description
Version 1.4: 2018-04-04
Changes: Data collection
Version 1.5: 2021-10-27
Changes: Database references, Derived calculations
Version 1.6: 2024-02-14
Changes: Data collection

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.