1LJ5
1.8A Resolution Structure of Latent Plasminogen Activator Inhibitor-1(PAI-1)
- PDB DOI: https://doi.org/10.2210/pdb1LJ5/pdb
- Classification: BLOOD CLOTTING
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2002-04-19 Released: 2002-05-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.241
- R-Value Work: 0.198
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PLASMINOGEN ACTIVATOR INHIBITOR-1 | 379 | Homo sapiens | Mutation(s): 0 Gene Names: SERPINE1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P05121 (Homo sapiens) Explore P05121 Go to UniProtKB: P05121 | |||||
PHAROS: P05121 GTEx: ENSG00000106366 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P05121 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| DMS Query on DMS | B [auth A], C [auth A], D [auth A], E [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |  | ||
| ACY Query on ACY | F [auth A] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.241
- R-Value Work: 0.198
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 156.574 | α = 90 |
| b = 46.885 | β = 106.54 |
| c = 63.048 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2002-05-08 Deposition Author(s): Stein, P.E., Baek, K.
Revision History (Full details and data files)
- Version 1.0: 2002-05-08
Type: Initial release - Version 1.1: 2008-04-28
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2023-08-16
Changes: Data collection, Database references, Derived calculations, Refinement description
