1DO4
CARBONMONOXY-MYOGLOBIN (MUTANT L29W) AFTER PHOTOLYSIS AT T<180K
- PDB DOI: https://doi.org/10.2210/pdb1DO4/pdb
- Classification: OXYGEN STORAGE/TRANSPORT
- Organism(s): Physeter catodon
- Expression System: Escherichia coli
- Mutation(s): Yes 
- Deposited: 1999-12-18 Released: 2000-01-05 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.209 
- R-Value Work: 0.184 
- R-Value Observed: 0.186 
wwPDB Validation   3D Report Full Report
This is version 2.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
MYOGLOBIN | 154 | Physeter catodon | Mutation(s): 3  | ||
UniProt | |||||
Find proteins for P02185 (Physeter macrocephalus) Explore P02185  Go to UniProtKB:  P02185 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P02185 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HEM Query on HEM | E [auth A] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L | |||
SO4 Query on SO4 | C [auth A], D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
CMO Query on CMO | F [auth A] | CARBON MONOXIDE C O UGFAIRIUMAVXCW-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
FME Query on FME | A | L-PEPTIDE LINKING | C6 H11 N O3 S | MET |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900006 Query on PRD_900006 | B | trehalose | Oligosaccharide / Nutrient |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.209 
- R-Value Work: 0.184 
- R-Value Observed: 0.186 
- Space Group: P 6
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 90.43 | α = 90 |
b = 90.43 | β = 90 |
c = 45.24 | γ = 120 |
Software Name | Purpose |
---|---|
X-PLOR | refinement |
SAINT | data reduction |
SAINT | data scaling |
CCP4 | data scaling |
TRUNCATE | data scaling |
Entry History 
Deposition Data
- Released Date: 2000-01-05  Deposition Author(s): Ostermann, A., Waschipky, R., Parak, F.G., Nienhaus, G.U.
Revision History (Full details and data files)
- Version 1.0: 2000-01-05
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-10-04
Changes: Refinement description - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2021-11-03
Changes: Database references, Structure summary - Version 2.2: 2022-12-21
Changes: Database references - Version 2.3: 2023-09-20
Changes: Data collection, Refinement description