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Structural View of Biology >> Infrastructure and Communication >> Signaling and Transport Across Cell Membranes

Structural View of Biology


Infrastructure and Communication Cells require a complex infrastructure of molecules for support and communication. Our bodies contain about 10 trillion cells, which must cooperate for the good of the entire body. This requires a complex infrastructure to organize them into tissues and organs, and a complex network of signals to coordinate their action.

Receptors and transporters are used to manage traffic of molecules and information across the waterproof cell membrane. Receptors capture signaling molecules on the surface of cells, and transmit the information inside, often starting a cascade of responses. Transporters oversee the traffic of molecules into and out of the cell, bringing in nutrients and expelling wastes.

Scroll to a Molecule of the Month Feature in this subcategory:

  • Acetylcholine Receptor

    Acetylcholine Receptor

    Nerve cells need to be able to send messages to each other quickly and clearly. One way that nerve cells communicate with their neighbors is by sending a burst of small neurotransmitter molecules. These molecules diffuse to the neighboring cell and bind to special receptor proteins in the cell surface. These receptors then open, allowing ions to flow inside. The process is fast because the small neurotransmitters, such as acetylcholine or serotonin, diffuse rapidly across the narrow synapse between the cells. The channels open in milliseconds, allowing ions to flood into the cell. Then, they close up just as fast, quickly terminating the message as the neurotransmitters separate and are removed from the synapse.

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    Discussed Structures
    acetylcholine receptor
    acetylcholine receptor
  • Acetylcholinesterase

    Acetylcholinesterase

    Every time you move a muscle and every time you think a thought, your nerve cells are hard at work. They are processing information: receiving signals, deciding what to do with them, and dispatching new messages off to their neighbors. Some nerve cells communicate directly with muscle cells, sending them the signal to contract. Other nerve cells are involved solely in the bureaucracy of information, spending their lives communicating only with other nerve cells. But unlike our human bureaucracies, this processing of information must be fast in order to keep up with the ever-changing demands of life.

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    Discussed Structures
    acetylcholinesterase
    acetylcholinesterase
  • Adrenergic Receptors

    Adrenergic Receptors

    Our bodies have many built-in defenses. Our immune system prowls through the body looking for infections by viruses and bacteria. Our blood is filled with molecules that form clots at the first sign of damage. Our nervous system is also hard-wired with instinctive defenses that stand ready to protect us in times of danger. You have probably experienced one of these defenses yourself--when you are startled or scared by an impending danger, you will feel a rush of energy flowing through your body. This has been termed the "flight or fight" response--your body is mobilizing its many resources to make you ready either to run away from danger, or stay and fight.

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    Discussed Structures
    adrenergic receptor
    adrenergic receptor
    adrenergic receptor
    adrenergic receptor
  • Aquaporin

    Aquaporin

    Cell membranes are fairly waterproof, forming a barrier that resists the crossing of water molecules. Some cells, however, need to allow more water to flow through the membrane. For instance, the concentration of wastes in the kidneys and the internal pressure of the eye involve careful control of water. In these cases, cells use aquaporins to control the flow of water in and out of the cell.

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    Discussed Structures
    Aquaporin
    Aquaporin
  • Auxin and TIR1 Ubiquitin Ligase

    Auxin and TIR1 Ubiquitin Ligase

    Plants, like animals, have hormones that deliver chemical messages between distant cells. Charles Darwin and his son discovered this over a century ago--they noticed that if they shined a light on the tips of grass shoots, the stems bend to bring the entire shoot towards the light. Somehow, a message was being sent from the tip down to the stem. You might also have observed the action of hormonal signals in plants: when you prune a tree to make it more bushy, you are modifying the traffic of plant hormones. Both of these effects are caused by the phytohormone auxin.

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    Discussed Structures
    TIR1 ubiquitin ligase
    TIR1 ubiquitin ligase
    IAA-aminoacid hydrolase
    IAA-aminoacid hydrolase
  • Bacteriorhodopsin

    Bacteriorhodopsin

    Sunlight powers the biological world. Through photosynthesis, plants capture sunlight and build sugars. These sugars then provide all of the starting materials for our growth and energy needs. As seen in the Molecule of Month last October, photosynthesis requires a complex collection of molecular antennas and photosystems. However, some archaebacteria have found a simpler solution to capturing sunlight.

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    Discussed Structures
    bacteriorhodopsin ground state
    bacteriorhodopsin ground state
    bacteriorhodopsin light-activated state
    bacteriorhodopsin light-activated state
  • Calcium Pump

    Calcium Pump

    Every time we move a muscle, it requires the combined action of trillions of myosin motors. Our muscle cells use calcium ions to coordinate this massive molecular effort. When a muscle cell is given the signal to contract from its associated nerves, it releases a flood of calcium ions from a special intracellular container, the sarcoplasmic reticulum, that surrounds the bundles of actin and myosin filaments. The calcium ions rapidly spread and bind to tropomyosins on the actin filaments. They shift shape slightly and allow myosin to bind and begin climbing up the filament. These trillions of myosin motors will continue climbing, contracting the muscle, until the calcium is removed.

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    Discussed Structures
    calcium pump with no calcium
    calcium pump with no calcium
    calcium pump with calcium
    calcium pump with calcium
  • Calmodulin

    Calmodulin

    Calcium is the most plentiful mineral element found in your body, with phosphorous coming in second. This probably doesn't come as a surprise, since your bones are strengthened and supported by about two kilograms of calcium and phosphorous. Your body also uses a small amount of calcium, in the form of calcium ions, to perform more active duties. Calcium ions play essential roles in cell signaling, helping to control processes such as muscle contraction, nerve signaling, fertilization and cell division. Through the action of calcium pumps and several kinds of calcium binding proteins, cells keep their internal calcium levels 1000-10,000 times lower than the calcium levels in the blood. Thus when calcium is released into cells, it can interact with calcium sensing proteins and trigger different biological effects, causing a muscle to contract, releasing insulin from the pancreas, or blocking the entry of additional sperm cells once an egg has been fertilized.

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    Discussed Structures
    calmodulin
    calmodulin
    calmodulin
    calmodulin
    calmodulin and target peptide
    calmodulin and target peptide
  • Epidermal Growth Factor

    Epidermal Growth Factor

    The cells in your body constantly communicate with each other, negotiating the transport and use of resources and deciding when to grow, when to rest, and when to die. Often, these messages are carried by small proteins, such as epidermal growth factor (EGF), shown here in red from PDB entry 1egf. EGF is a message telling cells that they have permission to grow. It is released by cells in areas of active growth, then is either picked up by the cell itself or by neighboring cells, stimulating their ability to divide. The message is received by a receptor on the cell surface, which binds to EGF and relays the message to signaling proteins inside the cell, ultimately mobilizing the processes needed for growth.

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    Discussed Structures
    epidermal growth factor
    epidermal growth factor
    EGF receptor extracellular domain
    EGF receptor extracellular domain
    EGF receptor extracellular domain and EGF
    EGF receptor extracellular domain and EGF
    EGF receptor transmembrane domain
    EGF receptor transmembrane domain
    EGF receptor tyrosine kinase domain
    EGF receptor tyrosine kinase domain
    EGF receptor tyrosine kinase domain
    EGF receptor tyrosine kinase domain
  • G Proteins

    G Proteins

    Cells communicate by passing small, disposable messages to one another. Some of these messengers travel to distant parts of the body through the blood, others simply diffuse over to a neighboring cell. Then, another cell picks the message up and reads it. Thousands of these messages are used in the human body. Some familiar examples include adrenaline, which controls the level of excitement, glucagon, which carries messages about blood sugar levels, histamine, which signals tissue damage, and dopamine, which relays messages in the nervous system.

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    Discussed Structures
    G-protein heterotrimer
    G-protein heterotrimer
    G-protein alpha subunit and adenylyl cyclase
    G-protein alpha subunit and adenylyl cyclase
    G-protein beta and gamma subunits
    G-protein beta and gamma subunits
  • Importins

    Importins

    Inside your cells, the process of protein synthesis is separated into two compartments. The first half of the job, when DNA is transcribed into RNA, is performed in the nucleus. The second half is then performed outside the nucleus, when ribosomes translate the RNA to construct proteins in the cytoplasm. This separation requires a continuous traffic of molecules: new RNA molecules must be transported out of the nucleus and nuclear proteins, such as newly-synthesized histones or polymerases, must be transported back into the nucleus. Huge tube-shaped nuclear pores act as the highway connecting the nucleus and the cytoplasm, and importins and exportins (collectively known as karyopherins) ferry molecules back and forth through the pore.

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    Discussed Structures
    importin-alpha
    importin-alpha
    importin-alpha
    importin-alpha
    importin-alpha, Ran, and CAS
    importin-alpha, Ran, and CAS
    importin-alpha, Ran, and CAS
    importin-alpha, Ran, and CAS
  • Mechanosensitive Channels

    Mechanosensitive Channels

    We are remarkably resistant to changes in our surrounding environment. Our bulky bodies allow us to weather extremes of heat and cold, and our skin protects us if we go for a swim in fresh water or salty water. If things get too uncomfortable, we can always get up and walk away, finding a warmer or cooler or drier place. Bacteria don't have as many options. They are tiny and they are immersed in water, so changes in the environment can pose life-threatening challenges. For instance, if it rains they may be suddenly surrounded by fresh water. This is dangerous because the water seeps into the cell through osmosis and increases the pressure inside. At other times, the bacterium may be shifted suddenly to salty conditions, which pulls water out and dehydrates the cell. Bacteria have methods for resisting these changes, so they can keep a steady, comfortable osmotic pressure inside.

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    Discussed Structures
    mechanosensitive channel MscS
    mechanosensitive channel MscS
    mechanosensitive channel MscS
    mechanosensitive channel MscS
    mechanosensitive channel MscL
    mechanosensitive channel MscL
  • Neurotransmitter Transporters

    Neurotransmitter Transporters

    Nerve cells communicate with one another in two ways. Some neurons send an electrical signal directly to their neighbors, which is very fast. Most neurons, however, use chemical signals to transmit their messages, releasing small neurotransmitter molecules that are recognized by receptors on neighboring neurons. Neurotransmitters have two important advantages: since thousands of molecules are released, they amplify the signal, and since many different types of neurotransmitters are used, they can encode a variety of different types of signals.

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    Discussed Structures
    Dopamine Transporter
    Dopamine Transporter
    Sodium-dependent Aspartate Transporter GltPh
    Sodium-dependent Aspartate Transporter GltPh
    Leucine Transporter LeuT
    Leucine Transporter LeuT
  • Neurotrophins

    Neurotrophins

    Your brain is composed of 85 billion interconnected neurons. Individually, each neuron receives signals from its many neighbors, and based on these signals, decides whether to dispatch its own signal to other nerve cells. Together, the combined action of all of these neurons allows us to sense the surrounding world, think about what we see, and make appropriate actions.

    Remarkably, this complicated structure is formed in nine short months as an embryo grows into a baby. Nerve cells start as typical, compact cells, but then they send out long axons and dendrites, connecting to other cells in the brain or even to entirely different parts of the body. Neurons in the growing brain test the connections with their neighbors, looking for the proper wiring. Half of the neurons are discarded during this process, in areas that get too crowded. The half that remain become the nervous system. Throughout the rest of life, these neurons typically do not reproduce, although they do send out more dendrites to neighboring cells as the nervous system grows or repairs damaged areas.

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    Discussed Structures
    nerve growth factor
    nerve growth factor
    nerve growth factor and receptor
    nerve growth factor and receptor
    nerve growth factor and receptor p75
    nerve growth factor and receptor p75
  • Nitric Oxide Synthase

    Nitric Oxide Synthase

    Nitroglycerin is a powerful explosive, detonating when exposed to heat or pressure. The same molecule, however, can save your life if you're experiencing a heart attack. A small dose of nitroglycerin will slowly break down and release nitric oxide (NO), which then spreads to the muscle cells surrounding blood vessels, telling them to relax. The curative properties of nitroglycerin have been used in this way for over a century, but scientists have only recently revealed how NO performs its job.

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    Discussed Structures
    inducible nitric oxide synthase, catalytic domain
    inducible nitric oxide synthase, catalytic domain
    neuronal nitric oxide synthase, reductase domain
    neuronal nitric oxide synthase, reductase domain
  • Potassium Channels

    Potassium Channels

    All living cells are surrounded by a membrane that separates the watery world inside from the environment outside. Membranes are effective barriers for small ions (as well as for large molecules like proteins and DNA), providing a novel opportunity: differences in ion levels may be used for rapid signaling. For instance, a cell can raise the level of potassium ions inside it. Then, at a moment's notice, potassium can be released through channels in the membrane, creating a large change in the potassium level that will be felt throughout the cell. This process is used in all types of cells - bacteria, plants and animals. Two common examples of ion channels at work are seen in muscle contraction (which is started by the release of calcium ions), and nerve signaling (which involves a complex flow of sodium and potassium ions).

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    Discussed Structures
    potassium channel selectivity filter
    potassium channel selectivity filter
    potassium channel
    potassium channel
  • Ras Protein

    Ras Protein

    Cells are constantly sending messages, discussing nutrient levels and growth rates with other cells, and also managing the internal needs of the cell. These messages need to be clear and strong, so that they can be heard over the busy bustle inside the crowded cytoplasm. One way to strengthen signals is to link them to a process that is chemically irreversible, like the cleavage of ATP or GTP.

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    Discussed Structures
    Ras with GTP analog
    Ras with GTP analog
    Ras with GDP
    Ras with GDP
  • SNARE Proteins

    SNARE Proteins

    Small membrane-enclosed vesicles are used like cargo trucks to deliver proteins and other molecules inside and outside of cells. When these vesicles reach their proper destination, they fuse with a membrane and deliver their cargo. For instance, vesicles are used inside cells to transport digestive enzymes from the Golgi to their final location in lysosomes. They are also used to deliver molecules out of the cell: for example, neurotransmitters are released from vesicles that fuse with the cell membrane at nerve synapses. The 2013 Nobel Prize was awarded to three researchers who have revealed the central molecular machinery for this process of vesicle fusion.

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    Discussed Structures
    SNARE Complex
    SNARE Complex
    NSF ATPase
    NSF ATPase
  • Serotonin Receptor

    Serotonin Receptor

    Are you feeling happy today? Are you feeling hungry? Do you get migraines? All of these behaviors, and many more, are controlled in part by the neurotransmitter serotonin. Serotonin, a small molecule made from the amino acid tryptophan, was discovered for its role in the constriction of blood vessels. Most of the serotonin in your body is found in the digestive system where it helps to control the motions needed for digestion. However, the most dramatic effects of serotonin are in the brain. Less than one in a million neurons uses serotonin for communication, but these neurons help to control our emotions, moods and thoughts.

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    Discussed Structures
    Serotonin Receptor
    Serotonin Receptor
  • Sodium-Potassium Pump

    Sodium-Potassium Pump

    Our bodies use a lot of energy. ATP (adenosine triphosphate) is one of the major currencies of energy in our cells; it is continually used and rebuilt throughout the day. Amazingly, if you add up the amount of ATP that is built each day, it would roughly equal the weight of your entire body. This ATP is spent in many ways: to power muscles, to make sure that enzymes perform the proper reactions, to heat your body. The lion's share, however, goes to the protein pictured here: roughly a third of the ATP made by our cells is spent to power the sodium-potassium pump.

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    Discussed Structures
    sodium-potassium pump
    sodium-potassium pump
  • Src Tyrosine Kinase

    Src Tyrosine Kinase

    Your body is a democratic nation of cells. Each cell is an individual with its own needs, but all of your cells work together to keep you alive. As you might imagine, this requires an incredible amount of cooperation. Cells are in constant communication to inform their neighbors of their needs and future plans. They send messages to each other, passing hormones and chemokines and other molecular messages from cell to cell. These messages are received by proteins in the cell membrane, which transmit the signal inside. There, a bewilderingly complex collection of proteins relays the message to all of the appropriate places inside the cell.

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    Discussed Structures
    Src tyrosine kinase
    Src tyrosine kinase

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