CadherinMarch 2008 Molecule of the Month by David Goodsell
doi: 10.2210/rcsb_pdb/mom_2008_3 (PDF Version, ePub Version )
Your body is composed of trillions of cells, all working together to keep you alive. As you might imagine, this requires a massive infrastructure to hold everything together. This infrastructure is built at many levels. Huge structures, like bones and tendons, are built to support and move the entire body. Many of the spaces between cells are supported by connective tissue, which is built from a collection of sturdy molecular cables and sheets. Finally, an intimate, molecule-sized infrastructure is used to adhere cells directly to their neighbors.
Cadherins are one of the many molecules that glue cells together.
They are long proteins that extend from the surface of the cell. The
outer portion (shown at the top here from PDB entry
is composed of a series of folded domains arranged one after the
next, and calcium ions bind between each domain, rigidifying the
whole structure. If calcium is removed, however, the chain becomes
floppy and is easily destroyed by protein-cutting enzymes. The tip of
the chain has a special tryptophan amino acid, colored red here, that
binds to cadherins on neighboring cells, adhering the two cells
The tail of the cadherin chain crosses the cell membrane (shown schematically in gray) and is linked to the cytoskeleton by catenin proteins. Beta-catenin (shown here in blue from PDB entry 1i7x) binds to the small tail of cadherin that hangs inside the cell. Alpha-catenin (not shown) then binds to beta-catenin and actin filaments.
There are many different types of cadherins, made by different types of cells. Each one is slightly different and sticks only to its proper partners. For instance, the one shown here is made by epidermal cells. These different cadherins play an important role in the development of embryos. They allow the growing cells to find their proper tissues and fix themselves in place. The attachments are much weaker in embryos, as they are sorting themselves into their proper places, and then the attachments are strengthened as the tissue matures.
Gluing Cells Together
Cadherin molecules assemble side-by-side into a large patch, called an adherens junction, that glues cells together. There is still some controversy about how cadherins are arranged in these junctions. When researchers look at them in the electron microscope, they often look different depending on how the samples were prepared. Some techniques show a highly ordered arrangement, with all the cadherins aligned symmetrically side-by-side, attached to a similar array on the neighboring cell. Other techniques show a big tangle of chains, all reaching across and connecting to whatever neighboring chain they can find. The structures shown here are representative of both views. On the left is a structure from X-ray crystallography; it shows a symmetrical structure (PDB entry 1l3w). The structures in the middle and on the right are models obtained by fitting an atomic structure to an electron micrograph (PDB entries 1q5a and 1q5c). These models show a much more random arrangement of the chains.
click on the image for an interactive Jmol
Exploring the Structure
The adhesive contact between two cadherin proteins is formed when a tryptophan on one
protein extends over and binds in a pocket on the other protein. The contact is shown here
from PDB entry
Notice the three calcium ions (in green) between the domains, which
rigidify the whole structure. If you want to explore this interaction yourself, PDB entry
1l3w is a tricky structure to use, since you have to perform a crystallographic transformation
to get the second protein structure (the transformation is a 180 degree rotation around the Y
axis, which may be obtained with coordinates -x, y, -z). You can easily see the interaction,
though, by looking at PDB entry
which only includes the last domain in each cadherin
chain, but has two proteins in the PDB file.
These pictures were created with RasMol. To create similar pictures, you can click on the accession codes here and pick one of the options under Images and Visualization.
More information on caherin
S. Pokutta and W. I. Weis (2007) Structure and Mechanism of Cadherins and Catenins in Cell-Cell Contacts. Annual Review of Cell and Developmental Biology 23, 237-261.
J. M. Gooding, K. L. Yap and M. Ikura (2004) The Cadherin-Catenin Complex as a Focal Point of Cell Adhesion and Signalling: New Insights from Three-dimensional Structures. BioEssays 26, 497-511.
© 2013 David Goodsell & RCSB Protein Data Bank