5V93
Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
J [auth D] | SCOP2 Family | Ribosomal protein L3 | 8089143 | 4002103 | SCOP2 (2022-06-29) |
J [auth D] | SCOP2 Superfamily | Translational proteins | 8089144 | 3000811 | SCOP2 (2022-06-29) |
J [auth D] | SCOP2B Superfamily | Translational proteins | 8099000 | 3000811 | SCOP2B (2022-06-29) |
P [auth K] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8099034 | 3000433 | SCOP2B (2022-06-29) |
Q [auth L] | SCOP2 Family | Ribosomal proteins L15p and L18e | 8070564 | 4003555 | SCOP2 (2022-06-29) |
Q [auth L] | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8070565 | 3001045 | SCOP2 (2022-06-29) |
Q [auth L] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8099032 | 3001045 | SCOP2B (2022-06-29) |
U [auth P] | SCOP2 Family | Ribosomal protein L19 | 8082428 | 4001761 | SCOP2 (2022-06-29) |
U [auth P] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082429 | 3000334 | SCOP2 (2022-06-29) |
U [auth P] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8099024 | 3000334 | SCOP2B (2022-06-29) |
V [auth Q] | SCOP2 Family | Ribosomal protein L20 | 8075005 | 4001930 | SCOP2 (2022-06-29) |
V [auth Q] | SCOP2 Superfamily | Ribosomal protein L20 | 8075006 | 3000563 | SCOP2 (2022-06-29) |
V [auth Q] | SCOP2B Superfamily | Ribosomal protein L20 | 8099022 | 3000563 | SCOP2B (2022-06-29) |
W [auth R] | SCOP2B Superfamily | l21p-like | 8082447 | 3002005 | SCOP2B (2022-06-29) |
X [auth S] | SCOP2 Family | Ribosomal protein L22 | 8081517 | 4001212 | SCOP2 (2022-06-29) |
X [auth S] | SCOP2 Superfamily | Ribosomal protein L22 | 8081518 | 3001078 | SCOP2 (2022-06-29) |
X [auth S] | SCOP2B Superfamily | Ribosomal protein L22 | 8099020 | 3001078 | SCOP2B (2022-06-29) |
Z [auth U] | SCOP2 Family | Ribosomal proteins L24p and L21e | 8082510 | 4001752 | SCOP2 (2022-06-29) |
Z [auth U] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082511 | 3000334 | SCOP2 (2022-06-29) |
Z [auth U] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8099016 | 3000334 | SCOP2B (2022-06-29) |
AA [auth V] | SCOP2B Superfamily | Ribosomal protein L25-like | 8099014 | 3001161 | SCOP2B (2022-06-29) |
KA [auth f] | SCOP2 Family | Ribosomal protein S6 | 8096043 | 4001337 | SCOP2 (2022-06-29) |
KA [auth f] | SCOP2 Superfamily | Ribosomal protein S6 | 8096044 | 3001323 | SCOP2 (2022-06-29) |
KA [auth f] | SCOP2B Superfamily | Ribosomal protein S6 | 8106252 | 3001323 | SCOP2B (2022-06-29) |
QA [auth l] | SCOP2 Family | Cold shock DNA-binding domain-like | 8098075 | 4001909 | SCOP2 (2022-06-29) |
QA [auth l] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8098076 | 3000135 | SCOP2 (2022-06-29) |
QA [auth l] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8106268 | 3000135 | SCOP2B (2022-06-29) |
UA [auth p] | SCOP2 Family | Ribosomal protein S16 | 8096037 | 4001077 | SCOP2 (2022-06-29) |
UA [auth p] | SCOP2 Superfamily | Ribosomal protein S16 | 8096038 | 3000680 | SCOP2 (2022-06-29) |
UA [auth p] | SCOP2B Superfamily | Ribosomal protein S16 | 8106260 | 3000680 | SCOP2B (2022-06-29) |
VA [auth q] | SCOP2 Family | Cold shock DNA-binding domain-like | 8096177 | 4001909 | SCOP2 (2022-06-29) |
VA [auth q] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8096178 | 3000135 | SCOP2 (2022-06-29) |
VA [auth q] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8106258 | 3000135 | SCOP2B (2022-06-29) |
K [auth E] | SCOP2 Family | Ribosomal protein L4 | 8080699 | 4003628 | SCOP2 (2022-06-29) |
K [auth E] | SCOP2 Superfamily | Ribosomal protein L4 | 8080700 | 3001146 | SCOP2 (2022-06-29) |
K [auth E] | SCOP2B Superfamily | Ribosomal protein L4 | 8098998 | 3001146 | SCOP2B (2022-06-29) |
L [auth F] | SCOP2 Family | Ribosomal protein L5 | 8073877 | 4001498 | SCOP2 (2022-06-29) |
L [auth F] | SCOP2 Superfamily | RL5-like | 8073878 | 3001709 | SCOP2 (2022-06-29) |
L [auth F] | SCOP2B Superfamily | RL5-like | 8098996 | 3001709 | SCOP2B (2022-06-29) |
N [auth H] | SCOP2B Superfamily | L9 N-domain-like | 8098994 | 3000338 | SCOP2B (2022-06-29) |
O [auth J] | SCOP2 Family | Ribosomal protein L13 | 8066068 | 4003623 | SCOP2 (2022-06-29) |
O [auth J] | SCOP2 Superfamily | Ribosomal protein L13 | 8066069 | 3001134 | SCOP2 (2022-06-29) |
O [auth J] | SCOP2B Superfamily | Ribosomal protein L13 | 8099036 | 3001134 | SCOP2B (2022-06-29) |
R [auth M] | SCOP2 Family | Ribosomal protein L16p | 8076052 | 4003717 | SCOP2 (2022-06-29) |
R [auth M] | SCOP2 Superfamily | Ribosomal protein L16p/L10e | 8076053 | 3000884 | SCOP2 (2022-06-29) |
R [auth M] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8099030 | 3000884 | SCOP2B (2022-06-29) |
S [auth N] | SCOP2 Family | Prokaryotic ribosomal protein L17 | 8089015 | 4003526 | SCOP2 (2022-06-29) |
S [auth N] | SCOP2 Superfamily | Prokaryotic ribosomal protein L17 | 8089016 | 3000995 | SCOP2 (2022-06-29) |
S [auth N] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8099028 | 3000995 | SCOP2B (2022-06-29) |
B [auth 1] | SCOP2 Family | Ribosomal protein L33p | 8075051 | 4000511 | SCOP2 (2022-06-29) |
B [auth 1] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8075052 | 3001320 | SCOP2 (2022-06-29) |
T [auth O] | SCOP2B Superfamily | Translational machinery components | 8099026 | 3000571 | SCOP2B (2022-06-29) |
Y [auth T] | SCOP2 Family | L23p | 8077102 | 4000943 | SCOP2 (2022-06-29) |
Y [auth T] | SCOP2 Superfamily | Ribosomal proteins S24e L23 and L15e | 8077103 | 3000210 | SCOP2 (2022-06-29) |
Y [auth T] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8099018 | 3000210 | SCOP2B (2022-06-29) |
BA [auth W] | SCOP2 Family | Ribosomal L27 protein | 8075033 | 4001900 | SCOP2 (2022-06-29) |
BA [auth W] | SCOP2 Superfamily | Ribosomal L27 protein-like | 8075034 | 3000539 | SCOP2 (2022-06-29) |
BA [auth W] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8099012 | 3000539 | SCOP2B (2022-06-29) |
DA [auth Y] | SCOP2 Family | Ribosomal protein L29 (L29p) | 8080679 | 4000600 | SCOP2 (2022-06-29) |
DA [auth Y] | SCOP2 Superfamily | Ribosomal protein L29 (L29p) | 8080680 | 3000713 | SCOP2 (2022-06-29) |
DA [auth Y] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8099010 | 3000713 | SCOP2B (2022-06-29) |
EA [auth Z] | SCOP2 Family | Ribosomal protein L30p/L7e | 8076276 | 4001360 | SCOP2 (2022-06-29) |
EA [auth Z] | SCOP2 Superfamily | Ribosomal protein L30p/L7e | 8076277 | 3001378 | SCOP2 (2022-06-29) |
EA [auth Z] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8099008 | 3001378 | SCOP2B (2022-06-29) |
IA [auth d] | SCOP2 Family | Ribosomal protein S4 | 8096019 | 4001399 | SCOP2 (2022-06-29) |
IA [auth d] | SCOP2 Superfamily | Alpha-L RNA-binding motif | 8096020 | 3001473 | SCOP2 (2022-06-29) |
IA [auth d] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8106254 | 3001473 | SCOP2B (2022-06-29) |
LA [auth g] | SCOP2 Family | Ribosomal protein S7 | 8096041 | 4001112 | SCOP2 (2022-06-29) |
LA [auth g] | SCOP2 Superfamily | Ribosomal protein S7 | 8096042 | 3000799 | SCOP2 (2022-06-29) |
LA [auth g] | SCOP2B Superfamily | Ribosomal protein S7 | 8094841 | 3000799 | SCOP2B (2022-06-29) |
MA [auth h] | SCOP2 Family | Ribosomal protein S8 | 8096033 | 4002027 | SCOP2 (2022-06-29) |
MA [auth h] | SCOP2 Superfamily | Ribosomal protein S8 | 8096034 | 3000709 | SCOP2 (2022-06-29) |
MA [auth h] | SCOP2B Superfamily | Ribosomal protein S8 | 8106250 | 3000709 | SCOP2B (2022-06-29) |
D [auth 3] | SCOP2 Family | Ribosomal protein L35p | 8083335 | 4003406 | SCOP2 (2022-06-29) |
D [auth 3] | SCOP2 Superfamily | L35p-like | 8083336 | 3000790 | SCOP2 (2022-06-29) |
D [auth 3] | SCOP2B Superfamily | L35p-like | 8099002 | 3000790 | SCOP2B (2022-06-29) |
NA [auth i] | SCOP2 Family | Translational machinery components | 8096031 | 4000951 | SCOP2 (2022-06-29) |
NA [auth i] | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8096032 | 3000100 | SCOP2 (2022-06-29) |
NA [auth i] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8106248 | 3000100 | SCOP2B (2022-06-29) |
OA [auth j] | SCOP2 Family | Ribosomal protein S10 | 8096023 | 4001240 | SCOP2 (2022-06-29) |
OA [auth j] | SCOP2 Superfamily | Ribosomal protein S10 | 8096024 | 3001336 | SCOP2 (2022-06-29) |
OA [auth j] | SCOP2B Superfamily | Ribosomal protein S10 | 8106272 | 3001336 | SCOP2B (2022-06-29) |
PA [auth k] | SCOP2 Family | Ribosomal protein L18p and S11 | 8096029 | 4000555 | SCOP2 (2022-06-29) |
PA [auth k] | SCOP2 Superfamily | Translational machinery components | 8096030 | 3000571 | SCOP2 (2022-06-29) |
PA [auth k] | SCOP2B Superfamily | Translational machinery components | 8106270 | 3000571 | SCOP2B (2022-06-29) |
RA [auth m] | SCOP2 Family | Ribosomal protein S13 | 8096021 | 4000260 | SCOP2 (2022-06-29) |
RA [auth m] | SCOP2 Superfamily | S13-like H2TH domain | 8096022 | 3000053 | SCOP2 (2022-06-29) |
RA [auth m] | SCOP2B Superfamily | S13-like H2TH domain | 8106266 | 3000053 | SCOP2B (2022-06-29) |
SA [auth n] | SCOP2 Family | Ribosomal protein S14p/S29e | 8096025 | 4003647 | SCOP2 (2022-06-29) |
SA [auth n] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8096026 | 3000068 | SCOP2 (2022-06-29) |
SA [auth n] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8106264 | 3000068 | SCOP2B (2022-06-29) |
TA [auth o] | SCOP2 Family | 30S Ribosomal protein S15 / 40S Ribosomal protein S13 | 8096039 | 4000767 | SCOP2 (2022-06-29) |
TA [auth o] | SCOP2 Superfamily | S15/NS1 RNA-binding domain | 8096040 | 3001284 | SCOP2 (2022-06-29) |
TA [auth o] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8106262 | 3001284 | SCOP2B (2022-06-29) |
E [auth 4] | SCOP2B Superfamily | Ribosomal protein L36 | 8083310 | 3001346 | SCOP2B (2022-06-29) |
XA [auth s] | SCOP2 Family | Ribosomal protein S19 | 8096035 | 4001081 | SCOP2 (2022-06-29) |
XA [auth s] | SCOP2 Superfamily | Ribosomal protein S19 | 8096036 | 3000686 | SCOP2 (2022-06-29) |
XA [auth s] | SCOP2B Superfamily | Ribosomal protein S19 | 8106256 | 3000686 | SCOP2B (2022-06-29) |
F [auth 6] | SCOP2 Family | Ribosomal protein L31p | 8086129 | 4003966 | SCOP2 (2022-06-29) |
F [auth 6] | SCOP2 Superfamily | L28p-like | 8086130 | 3001966 | SCOP2 (2022-06-29) |
F [auth 6] | SCOP2B Superfamily | L28p-like | 8099006 | 3001966 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
J [auth D] | PF00297 | e5v93D1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00297 | ECOD (1.6) |
M [auth G] | PF00347 | e5v93G1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: PF00347 | ECOD (1.6) |
P [auth K] | PF00238 | e5v93K1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
Q [auth L] | PF00828 | e5v93L1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF00828 | ECOD (1.6) |
U [auth P] | PF01245 | e5v93P1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01245 | ECOD (1.6) |
V [auth Q] | PF00453 | e5v93Q1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: PF00453 | ECOD (1.6) |
W [auth R] | PF00829 | e5v93R1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: PF00829 | ECOD (1.6) |
X [auth S] | PF00237 | e5v93S1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: PF00237 | ECOD (1.6) |
Z [auth U] | PF00467,PF17136 | e5v93U1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF17136 | ECOD (1.6) |
AA [auth V] | PF01386 | e5v93V1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: PF01386 | ECOD (1.6) |
AA [auth V] | PF14693 | e5v93V2 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology) | T: Ribosomal protein TL5/L25 C-terminal domain-related | F: PF14693 | ECOD (1.6) |
KA [auth f] | PF01250 | e5v93f1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: PF01250 | ECOD (1.6) |
QA [auth l] | PF00164 | e5v93l1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00164 | ECOD (1.6) |
UA [auth p] | PF00886 | e5v93p1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: PF00886 | ECOD (1.6) |
VA [auth q] | PF00366 | e5v93q1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00366 | ECOD (1.6) |
A [auth 0] | PF01783 | e5v9301 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01783 | ECOD (1.6) |
K [auth E] | PF00573 | e5v93E1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: PF00573 | ECOD (1.6) |
L [auth F] | PF00281,PF00673 | e5v93F1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: PF00281,PF00673 | ECOD (1.6) |
N [auth H] | PF01281 | e5v93H1 | A: a+b two layers | X: L9 N-domain-like | H: L9 N-domain-like (From Topology) | T: L9 N-domain-like | F: PF01281 | ECOD (1.6) |
O [auth J] | PF00572 | e5v93J1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: PF00572 | ECOD (1.6) |
R [auth M] | PF00252 | e5v93M1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: PF00252 | ECOD (1.6) |
S [auth N] | PF01196 | e5v93N1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: PF01196 | ECOD (1.6) |
B [auth 1] | PF00471 | e5v9311 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF00471 | ECOD (1.6) |
T [auth O] | PF00861 | e5v93O1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00861 | ECOD (1.6) |
Y [auth T] | PF00276 | e5v93T1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276 | ECOD (1.6) |
BA [auth W] | PF01016 | e5v93W1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: PF01016 | ECOD (1.6) |
CA [auth X] | PF00830 | e5v93X1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: PF00830 | ECOD (1.6) |
C [auth 2] | PF00468 | e5v9321 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: PF00468 | ECOD (1.6) |
DA [auth Y] | PF00831 | e5v93Y1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF00831 | ECOD (1.6) |
EA [auth Z] | PF00327 | e5v93Z1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327 | ECOD (1.6) |
HA [auth c] | PF00189 | e5v93c1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: PF00189 | ECOD (1.6) |
HA [auth c] | PF07650 | e5v93c2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF07650 | ECOD (1.6) |
IA [auth d] | PF00163,PF01479 | e5v93d1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF00163,PF01479 | ECOD (1.6) |
JA [auth e] | PF03719 | e5v93e1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF03719 | ECOD (1.6) |
JA [auth e] | PF00333 | e5v93e2 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: PF00333 | ECOD (1.6) |
LA [auth g] | PF00177 | e5v93g1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: PF00177 | ECOD (1.6) |
MA [auth h] | PF00410 | e5v93h1 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: PF00410 | ECOD (1.6) |
MA [auth h] | PF00410 | e5v93h2 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: PF00410 | ECOD (1.6) |
D [auth 3] | PF01632 | e5v9331 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: PF01632 | ECOD (1.6) |
NA [auth i] | PF00380 | e5v93i1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
OA [auth j] | PF00338 | e5v93j1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
PA [auth k] | PF00411 | e5v93k1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00411 | ECOD (1.6) |
RA [auth m] | PF00416 | e5v93m1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF00416 | ECOD (1.6) |
SA [auth n] | PF00253 | e5v93n1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00253 | ECOD (1.6) |
TA [auth o] | PF00312 | e5v93o1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF00312 | ECOD (1.6) |
WA [auth r] | PF01084 | e5v93r1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF01084 | ECOD (1.6) |
E [auth 4] | PF00444 | e5v9341 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: PF00444 | ECOD (1.6) |
XA [auth s] | PF00203 | e5v93s1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: PF00203 | ECOD (1.6) |
YA [auth t] | PF01649 | e5v93t1 | A: alpha bundles | X: Spectrin repeat-like | H: Ribosomal protein S20 (From Topology) | T: Ribosomal protein S20 | F: PF01649 | ECOD (1.6) |
F [auth 6] | PF01197 | e5v9361 | A: few secondary structure elements | X: Ribosomal protein L31p (From Topology) | H: Ribosomal protein L31p (From Topology) | T: Ribosomal protein L31p | F: PF01197 | ECOD (1.6) |
I [auth C] | PF00181 | e5v93C2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00181 | ECOD (1.6) |
I [auth C] | PF03947 | e5v93C1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF03947 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
J [auth D] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
M [auth G] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | - | Domain |
U [auth P] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
V [auth Q] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
X [auth S] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
Z [auth U] | PF17136 | Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24) | Ribosomal proteins 50S L24/mitochondrial 39S L24 | - | Family |
Z [auth U] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
AA [auth V] | PF14693 | Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C) | Ribosomal protein TL5, C-terminal domain | This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ... | Domain |
AA [auth V] | PF01386 | Ribosomal L25p family (Ribosomal_L25p) | Ribosomal L25p family | Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. | Domain |
KA [auth f] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | - | Domain |
QA [auth l] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | - | Family |
UA [auth p] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
VA [auth q] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | - | Domain |
A [auth 0] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
K [auth E] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
L [auth F] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | - | Domain |
L [auth F] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
N [auth H] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | - | Domain |
O [auth J] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
R [auth M] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | - | Domain |
S [auth N] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
B [auth 1] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
T [auth O] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
Y [auth T] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
BA [auth W] | PF01016 | Ribosomal L27 protein (Ribosomal_L27) | Ribosomal L27 protein | - | Family |
CA [auth X] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
DA [auth Y] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
EA [auth Z] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
HA [auth c] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
HA [auth c] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
IA [auth d] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
IA [auth d] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
JA [auth e] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | - | Domain |
JA [auth e] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | - | Domain |
LA [auth g] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
MA [auth h] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | - | Domain |
D [auth 3] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
NA [auth i] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
OA [auth j] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
PA [auth k] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
RA [auth m] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
SA [auth n] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
TA [auth o] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | - | Domain |
WA [auth r] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
XA [auth s] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | - | Domain |
YA [auth t] | PF01649 | Ribosomal protein S20 (Ribosomal_S20p) | Ribosomal protein S20 | - | Family |
F [auth 6] | PF01197 | Ribosomal protein L31 (Ribosomal_L31) | Ribosomal protein L31 | - | Family |
I [auth C] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | - | Domain |
I [auth C] | PF00181 | Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) | Ribosomal Proteins L2, RNA binding domain | - | Domain |