2NUD
The structure of the type III effector AvrB complexed with a high-affinity RIN4 peptide
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2nuda1 | Multi-domain proteins (alpha and beta) | Antivirulence factor | Antivirulence factor | Antivirulence factor | Type III effector AvrB | (Pseudomonas savastanoi pv. glycinea ) [TaxId: 318 ], | SCOPe (2.08) |
B | d2nudb1 | Multi-domain proteins (alpha and beta) | Antivirulence factor | Antivirulence factor | Antivirulence factor | Type III effector AvrB | (Pseudomonas savastanoi pv. glycinea ) [TaxId: 318 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF05394 | e2nudA1 | A: alpha bundles | X: Fic-like (From Topology) | H: Fic-like (From Topology) | T: Fic-like | F: PF05394 | ECOD (1.6) |
A | PF05394 | e2nudA2 | A: a+b three layers | X: a+b domain in antivirulence factor (From Topology) | H: a+b domain in antivirulence factor (From Topology) | T: a+b domain in antivirulence factor | F: PF05394 | ECOD (1.6) |
B | PF05394 | e2nudB1 | A: alpha bundles | X: Fic-like (From Topology) | H: Fic-like (From Topology) | T: Fic-like | F: PF05394 | ECOD (1.6) |
B | PF05394 | e2nudB2 | A: a+b three layers | X: a+b domain in antivirulence factor (From Topology) | H: a+b domain in antivirulence factor (From Topology) | T: a+b domain in antivirulence factor | F: PF05394 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.3290.20 | Mainly Alpha | Orthogonal Bundle | Fic-like fold | CATH (4.3.0) | |
B | 1.10.3290.20 | Mainly Alpha | Orthogonal Bundle | Fic-like fold | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05394 | Avirulence protein (AvrB_AvrC) | Avirulence protein | - | Family | |
PF05627 | Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) | Cleavage site for pathogenic type III effector avirulence factor Avr | This domain is conserved in small families of otherwise unrelated proteins in both mono-cots and di-cots, suggesting that it has a conserved, plant-specific function. It is found both in the plant RIN4 (resistance R membrane-bound host-target protein ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008798 | Avirulence B/C | Family | |
IPR036231 | Avirulence B/C superfamily | Homologous Superfamily | |
IPR040387 | RPM1-interacting protein 4/NOI4 | Family | |
IPR008700 | RIN4, pathogenic type III effector avirulence factor Avr cleavage site | Domain |