2GU1
Crystal structure of a zinc containing peptidase from vibrio cholerae
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | LytM-like | 8091005 | 4000931 | SCOP2 (2022-06-29) |
A | SCOP2 Family | OapA/Csd3 repeated domain-like | 8045585 | 4004548 | SCOP2 (2022-06-29) |
A | SCOP2 Family | OapA/Csd3 repeated domain-like | 8091002 | 4004548 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Duplicated hybrid motif | 8091006 | 3001927 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | LysM domain-like | 8091003 | 3001938 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | LysM domain-like | 8091004 | 3001938 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF04225 | e2gu1A3 | A: alpha arrays | X: HTH | H: LysM domain (From Topology) | T: LysM domain | F: PF04225 | ECOD (1.6) |
A | PF19425 | e2gu1A2 | A: a+b two layers | X: Csd3 N-terminal domain (From Topology) | H: Csd3 N-terminal domain (From Topology) | T: Csd3 N-terminal domain | F: PF19425 | ECOD (1.6) |
A | PF01551 | e2gu1A1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Duplicated hybrid motif | F: PF01551 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.450.350 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
A | 2.70.70.10 | Mainly Beta | Distorted Sandwich | Glucose Permease (Domain IIA) | Glucose Permease (Domain IIA) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04225 | Opacity-associated protein A LysM-like domain (OapA) | Opacity-associated protein A LysM-like domain | The OapA domain gets its name from the Haemophilus influenzae protein OapA, which is required for the expression of colony opacity, thus opacity- associated protein A [1]. The OapA protein is required for efficient nasopharyngeal mucosal colonization ... | Domain | |
PF19425 | Csd3 second domain (Csd3_N2) | Csd3 second domain | This entry represents the second domain from the Csd3 peptidase [2]. This domain has a similar structure to Pfam:PF18059 despite low sequence similarity [2]. | Domain | |
PF01551 | Peptidase family M23 (Peptidase_M23) | Peptidase family M23 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR045834 | Csd3-like, second N-terminal domain | Domain | |
IPR007340 | Opacity-associated protein A | Domain | |
IPR016047 | Peptidase M23 | Domain | |
IPR011055 | Duplicated hybrid motif | Homologous Superfamily |