1SXJ
Crystal Structure of the Eukaryotic Clamp Loader (Replication Factor C, RFC) Bound to the DNA Sliding Clamp (Proliferating Cell Nuclear Antigen, PCNA)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Extended AAA-ATPase domain | 8027381 | 4000283 | SCOP2 (2022-06-29) |
A | SCOP2 Family | DNA polymerase III clamp loader subunits C-terminal domain | 8027379 | 4001080 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104166 | 3002834 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RecA-like P-loop NTPases | 8039760 | 3002019 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Post-AAA+ oligomerization domain-like | 8039758 | 3000691 | SCOP2 (2022-06-29) |
C | SCOP2 Family | Extended AAA-ATPase domain | 8027388 | 4000283 | SCOP2 (2022-06-29) |
C | SCOP2 Family | DNA polymerase III clamp loader subunits C-terminal domain | 8027384 | 4001080 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104168 | 3002834 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | RecA-like P-loop NTPases | 8039767 | 3002019 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Post-AAA+ oligomerization domain-like | 8039763 | 3000691 | SCOP2 (2022-06-29) |
D | SCOP2 Family | Extended AAA-ATPase domain | 8027392 | 4000283 | SCOP2 (2022-06-29) |
D | SCOP2 Family | DNA polymerase III clamp loader subunits C-terminal domain | 8027390 | 4001080 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104169 | 3002834 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | RecA-like P-loop NTPases | 8039771 | 3002019 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | Post-AAA+ oligomerization domain-like | 8039769 | 3000691 | SCOP2 (2022-06-29) |
F | SCOP2B Superfamily | DNA clamp | 8036430 | 3000780 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | DNA clamp | 8036432 | 3000780 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | DNA clamp | 8036430 | 3000780 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | DNA clamp | 8036432 | 3000780 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | DNA clamp | 8036432 | 3000780 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | DNA clamp | 8036430 | 3000780 | SCOP2B (2022-06-29) |
B | SCOP2 Family | Extended AAA-ATPase domain | 8027383 | 4000283 | SCOP2 (2022-06-29) |
B | SCOP2 Family | DNA polymerase III clamp loader subunits C-terminal domain | 8027382 | 4001080 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104167 | 3002834 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | RecA-like P-loop NTPases | 8039762 | 3002019 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Post-AAA+ oligomerization domain-like | 8039761 | 3000691 | SCOP2 (2022-06-29) |
E | SCOP2 Family | Extended AAA-ATPase domain | 8027395 | 4000283 | SCOP2 (2022-06-29) |
E | SCOP2 Family | DNA polymerase III clamp loader subunits C-terminal domain | 8027396 | 4001080 | SCOP2 (2022-06-29) |
E | SCOP2 Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104170 | 3002834 | SCOP2 (2022-06-29) |
E | SCOP2 Superfamily | RecA-like P-loop NTPases | 8039774 | 3002019 | SCOP2 (2022-06-29) |
E | SCOP2 Superfamily | Post-AAA+ oligomerization domain-like | 8039775 | 3000691 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF08519 | e1sxjA1 | A: alpha arrays | X: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | T: DNA polymerase III clamp loader subunits, C-terminal domain | F: PF08519 | ECOD (1.6) |
A | F_UNCLASSIFIED | e1sxjA2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF00004 | e1sxjA3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
C | PF08542 | e1sxjC1 | A: alpha arrays | X: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | T: DNA polymerase III clamp loader subunits, C-terminal domain | F: PF08542 | ECOD (1.6) |
C | F_UNCLASSIFIED | e1sxjC6 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF00004 | e1sxjC5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
D | PF08542 | e1sxjD1 | A: alpha arrays | X: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | T: DNA polymerase III clamp loader subunits, C-terminal domain | F: PF08542 | ECOD (1.6) |
D | PF21960 | e1sxjD5 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF21960 | ECOD (1.6) |
D | PF00004 | e1sxjD4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
F | PF00705 | e1sxjF1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF00705 | ECOD (1.6) |
F | PF02747 | e1sxjF2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF02747 | ECOD (1.6) |
G | PF00705 | e1sxjG1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF00705 | ECOD (1.6) |
G | PF02747 | e1sxjG2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF02747 | ECOD (1.6) |
H | PF00705 | e1sxjH1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF00705 | ECOD (1.6) |
H | PF02747 | e1sxjH2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF02747 | ECOD (1.6) |
B | PF08542 | e1sxjB1 | A: alpha arrays | X: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | T: DNA polymerase III clamp loader subunits, C-terminal domain | F: PF08542 | ECOD (1.6) |
B | F_UNCLASSIFIED | e1sxjB2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF00004 | e1sxjB3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
E | PF22534 | e1sxjE1 | A: alpha arrays | X: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | T: DNA polymerase III clamp loader subunits, C-terminal domain | F: PF22534 | ECOD (1.6) |
E | PF21960 | e1sxjE5 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF21960 | ECOD (1.6) |
E | PF13177 | e1sxjE6 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13177 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08519 | Replication factor RFC1 C terminal domain (RFC1) | Replication factor RFC1 C terminal domain | This is the C terminal domain of replication factor C, RFC1. RFC complexes hydrolyse ATP and load sliding clamps such as PCNA (proliferating cell nuclear antigen) onto double-stranded DNA. RFC1 is essential for RFC function in vivo [1][2]. | Domain | |
PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
PF08542 | Replication factor C C-terminal domain (Rep_fac_C) | Replication factor C C-terminal domain | This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which resul ... | Domain | |
PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
PF08542 | Replication factor C C-terminal domain (Rep_fac_C) | Replication factor C C-terminal domain | This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which resul ... | Domain | |
PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
PF02747 | Proliferating cell nuclear antigen, C-terminal domain (PCNA_C) | Proliferating cell nuclear antigen, C-terminal domain | N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA. | Domain | |
PF00705 | Proliferating cell nuclear antigen, N-terminal domain (PCNA_N) | Proliferating cell nuclear antigen, N-terminal domain | N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA. | Domain | |
PF08542 | Replication factor C C-terminal domain (Rep_fac_C) | Replication factor C C-terminal domain | This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which resul ... | Domain | |
PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
PF13177 | DNA polymerase III, delta subunit (DNA_pol3_delta2) | DNA polymerase III, delta subunit | DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction [1]. The delta subunit is also known as ... | Domain |