1GW8
quasi-atomic resolution model of bacteriophage PRD1 sus607 mutant, obtained by combined cryo-EM and X-ray crystallography.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF09018 | e1gw8A2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
B | PF09018 | e1gw8B2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
C | PF09018 | e1gw8C2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
D | PF09018 | e1gw8D2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
E | PF09018 | e1gw8E2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
F | PF09018 | e1gw8F2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
G | PF09018 | e1gw8G2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
H | PF09018 | e1gw8H2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
I | PF09018 | e1gw8I2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
J | PF09018 | e1gw8J2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
K | PF09018 | e1gw8K2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
L | PF09018 | e1gw8L2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09018 | P3 major capsid protein (Phage_Capsid_P3) | P3 major capsid protein | The P3 major capsid protein adopts a 'double-barrel' structure comprising two eight-stranded viral beta-barrels or jelly rolls, each of which contains a 12-residue alpha-helix. This protein then trimerises through a 'trimerisation loop' sequence, and ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
MAJOR CAPSID PROTEIN | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
IPR016112 | Group II dsDNA virus coat/capsid protein | Homologous Superfamily | |
IPR015108 | Bacteriophage PRD1, P3 | Family | |
IPR016115 | Bacteriophage PRD1, P3, N-terminal | Homologous Superfamily |